Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2352 ATGTTCAGTAACTTGCATAAAGTTGTCCCTGACATTCTCTTCACCTTGCTCCTAGTGGCATTGTTGTTGCTGCTGGCGTTGAGCAATGGAGTCAGAGTTAATGGTGACGGTGGCGGCAGTGGTAGGCAATGTGAGGTTAATCTAGCACTAAAGCCAAGACCAAGACCACACACTGTCTCCATCTTGGAGTTTGGTGCAGTTGGGGATGGTAAAACATTGAACACTATTGCATTCCAGAATGCCATTTTCTATCTCAAGTCATTTGCTGACAAGGGTGGTGCTCAGTTATATGTGCCACCGGGGACATGGTTGACTCAAAGTTTCAATCTTACTAGCCATCTTACACTCTTCTTGGAAAAAGGTGCTGTAATTATTGGATCTCAGGATCCATTTCACACAGAAGTTGTGGATCCATTACCTTCTTATGGCCGAGGAGTTGAAGTTCCTGGGGGAAGATATCAGAGTTTCATTAATGGATACATGTTACATGATGTGGTGATAACAGGTAATAATGGAACCATTGATGGCATGGGATTGGCGTGGTGGGAATTGTTTAGCTCTCATTCCTTGAACTACAGCCGTCCACATCTGATTGAACTAGTGGCATCTGATCACGTTGTAGTTTCAAATCTTACATTCTTGAACGCTCCTGCATATAGCATTCATCCAGTTTATTGCAGCAATGTACATATTCACAATGTTTCAATTTCTGCTCCTCCAGAATCCCCTTACACCATTGGCATAGTACCAGATTCTTCTGATCATGTTTGTATAGAGGATTGTGTGATTGCAACGGGCTATGATGCAATTGCACTCAAAAGTGGATGGGACGAATATGGCATTGCCTATGGAAGGCCAACTGAGAATGTACACATCAGAAGGGTGCATCTGCAGGCTTATTTAGGCTCTACTATTGCATTTGGCAGTGACATGTCTGGTGGAATTTCAAATATTATTGTGGAGAATGTTCATCTTTACAACTCAAAGAGTGGCATTGAGTTCAGAACCATGAGGGGCAGAGGTGGTTACATGAAGGAAATCATTATATCAGACATAGAAATGGAGAATACATACACTGCAATAGCTGCCACAGGTTATTGTGGGTCTCATCCTGATGACAAATATGATCCCAATGCTCTACCACTTTTGGACCACATTATTTTGCAAGATATGATTGGCACAAACGTCACTATTGCTGGAAGCTTTGCTGGACTACAAGAATCTCTCTTCACTCGCATATGCCTTTCCAACATAACTTTGTATACAAATTCTGTTTCTTCCAATCTTTGGGAATGCTCAAATGTCTCCGGATTTTCAGATTCTGTTCTTCCCAAACCATGTCCTGACCTTGAGACTCTTTCGGATTGTCTCTCCCTGCTCAGTATCAACGGAGAAACTGCAGTCATGTGA 1410 0.4241 MFSNLHKVVPDILFTLLLVALLLLLALSNGVRVNGDGGGSGRQCEVNLALKPRPRPHTVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGTWLTQSFNLTSHLTLFLEKGAVIIGSQDPFHTEVVDPLPSYGRGVEVPGGRYQSFINGYMLHDVVITGNNGTIDGMGLAWWELFSSHSLNYSRPHLIELVASDHVVVSNLTFLNAPAYSIHPVYCSNVHIHNVSISAPPESPYTIGIVPDSSDHVCIEDCVIATGYDAIALKSGWDEYGIAYGRPTENVHIRRVHLQAYLGSTIAFGSDMSGGISNIIVENVHLYNSKSGIEFRTMRGRGGYMKEIIISDIEMENTYTAIAATGYCGSHPDDKYDPNALPLLDHIILQDMIGTNVTIAGSFAGLQESLFTRICLSNITLYTNSVSSNLWECSNVSGFSDSVLPKPCPDLETLSDCLSLLSINGETAVM 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2352 469 Gene3D - 43 441 IPR012334 -
Aed6g2352 469 PANTHER PECTIN LYASE-RELATED 18 458 - -
Aed6g2352 469 Pfam Glycosyl hydrolases family 28 154 436 IPR000743 GO:0004650|GO:0005975
Aed6g2352 469 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 18 458 - -
Aed6g2352 469 SUPERFAMILY Pectin lyase-like 49 449 IPR011050 -
Aed6g2352 469 SMART pbh1 203 225 IPR006626 -
Aed6g2352 469 SMART pbh1 344 365 IPR006626 -
Aed6g2352 469 SMART pbh1 287 309 IPR006626 -
Aed6g2352 469 SMART pbh1 226 252 IPR006626 -
Aed6g2352 469 SMART pbh1 315 336 IPR006626 -
Aed6g2352 469 SMART pbh1 253 274 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2352 Aed-Chr6 25333061 25335360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2352 19 456 Glycoside Hydrolase AT3G06770 62.557 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2352 - - gmx:100802343 827.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2352 6 25333061 25335360 Aed6g2352 6 25333061 25335360 ECH
Aed6g2352 6 25333061 25335360 Aed4g0674 4 5646584 5649710 PCT