Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0674 ATGCTTATAATAATACTCACAAAACTGCATAAAGCTGCTTCTGTTCCCGTGGTGGCATTGCTCTTGCTGGTGGCATTGAGCAATGCCGTGAGAATTAATGGAGATGGTGGACAATGTGGTTCAAACCCAACACTAGACCCAAGACCACACAGTGTCTCAATTTTGGAGTTTGGTGCAGTTGGAGATGGTAAAACACTCAACACTATTGCATTCCAGAATGCCATCTTCTATCTCAAGTCATTTGCTGATAAGGGTGGCGCTCAGCTCTATGTGCCTTCGGGAAAATGGCTCACTGGAAGCTTCAATCTCACCAGCCATCTTACCCTCTTTTTGGAAAAAGGTGCTGTCATTATTGGAACTCAGGATCCATCTCATTGGGATGTTGTTGAACCCTTGCCTTCTTATGGCCGAGGGCTCGAAGTTCCCGGGGGAAGATATCAGAGTTTGATAAATGGATACATGTTACATGATGTGGTCGTAACAGGTAATAATGGAACCATTGATGGCATGGGAATGGTTTGGTGGGAGTGGTATAGCAATCATTCCTTGAACCACAGTCGTCCTCATTTGGTTGAAATTGTGGCATCTGATTATGTGGTAGTTTCAAATCTTACATTCTTGAATGCTCCAGCTTATAGCATACATCCAGTTTATTGCAGCCATGTGCATATTCAAAATGTTTCAATATCTGCTCCTCCAGAATCCCCTGATACTGTTGGTATAGTGCCAGATTCTTCTGATAATGTGTGTATAGAAGATTGTATTGTTGCCATGGGATTTGATGCAATTTCTCTCAAAAGTGGCTGGGATGAGTATGGCATTGCCTATGGCAGGCCGACCGAGAATGTACACATCAGAAGGGTGCACCTTCATGCATTTTCTGGCTCTGCTCTTGCATTTGGCAGTGACATGTCTGGTGGAATTTCAAATGTTCTAGTGGAGCATGCTCATGTTTTCAACTCAAAGACTGGCATTGAGTTCAGAACCACGAAAGGAAGAGGTGGTTACATGAAAGAAATTGTTCTATCAGACGTACAAATGGAGAATGTCCACACAGCAATTGCTGCCACAGGTAACTGTGGCTCTCATCCTGATGACAAGTTTGATCCAAATGCACTCCCACATTTGGATCACATTACCTTGAAGGATGTCATAGGTACAAACATCACCATTGCTGGAAACTTAGCTGGAATAGAAGAATCCCCTTTCACAAACATATGCCTCTCCAACATAACCTTGTCTACAAATTCTGTTTCTCCTATCACTTGGGAATGCTCAAATGTGTCTGGTTTTTCAGACTCAGTGTTTCCAGAACCTTGTCCTGAACTTGGCAACCCTTCATATGATTCTTCCTCATCATGTTTCTATCTGCTGAGTGTCAGTGGCAAAACTGCAGTACAGTGA 1404 0.4309 MLIIILTKLHKAASVPVVALLLLVALSNAVRINGDGGQCGSNPTLDPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVIIGTQDPSHWDVVEPLPSYGRGLEVPGGRYQSLINGYMLHDVVVTGNNGTIDGMGMVWWEWYSNHSLNHSRPHLVEIVASDYVVVSNLTFLNAPAYSIHPVYCSHVHIQNVSISAPPESPDTVGIVPDSSDNVCIEDCIVAMGFDAISLKSGWDEYGIAYGRPTENVHIRRVHLHAFSGSALAFGSDMSGGISNVLVEHAHVFNSKTGIEFRTTKGRGGYMKEIVLSDVQMENVHTAIAATGNCGSHPDDKFDPNALPHLDHITLKDVIGTNITIAGNLAGIEESPFTNICLSNITLSTNSVSPITWECSNVSGFSDSVFPEPCPELGNPSYDSSSSCFYLLSVSGKTAVQ 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0674 467 SUPERFAMILY Pectin lyase-like 47 443 IPR011050 -
Aed4g0674 467 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 17 461 - -
Aed4g0674 467 Gene3D - 41 433 IPR012334 -
Aed4g0674 467 Pfam Glycosyl hydrolases family 28 150 429 IPR000743 GO:0004650|GO:0005975
Aed4g0674 467 PANTHER PECTIN LYASE-RELATED 17 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0674 Aed-Chr4 5646584 5649710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0674 18 455 Glycoside Hydrolase AT3G16850 63.409 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0674 - - gmx:100777503 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0674 4 5646584 5649710 Aed4g0674 4 5646584 5649710 ECH
Aed6g2352 6 25333061 25335360 Aed4g0674 4 5646584 5649710 PCT