Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2168 ATGGTGGAGACCTCAACGCTAGGGCGGTTCCAGCAGCAAAGGCTCGACCTTCGCCGCTGGCTCCCCACGTTTTTAACCTCCCACAAGACCCTCTTAACCGTTCTATGGATCGCCGCCTTCGCCTCCGTTTTTGTGTGGCAGAGGAACATAGTCGGTGGCTTTCTGGTCTACAGTGGAATTCCGGCCAGCCCCATGCCCAAGCTCCGCCCCATGGCCTTCAATTTGACGGATTTCGGAGGCGTCGGTGACGGCGTTACTCTCAACACCCAGGCTTTCGAGAGGGCCGTTTCTGCCATTTCTAAGTTCGGGAAGAAAGGCGGTGCGCAGTTAAATGTGCCTCCTGGACGCTGGCTCACGGCGCCGTTTAATCTCACCAGCCACATGACTCTCTTTCTAGCTCAAGATGCTGTTATACTTGGCATTGATGATGAAAAATACTGGCCACTTATGCCTCCATTGCCTTCATATGGGTATGGGAGGGAGCATCCTGGGCCTCGATATGGCAGTTTGATTCATGGTCAACATCTTAAAGATATTGTGATAACAGGACATAACGGTACCATAAATGGACAGGGACAAGCATGGTGGAAAAAATATCGCCAGAAGCGTCTCAACCACACTAGGGGGCCACTTGTTCAGATCATGTTTTCTAGTGACATTGTGTTCACTAATATTACTTTGCGCGACTCTCCTTTCTGGACACTTCATCCATATGACTGCAAAAACATTACAATAAAAGGTGTTACTATATTGGCTCCTGTGTTGGATGCTCCAAATACTGATGGCATAGATCCTGGCAAGCAAAACCAAGCAGGAATAGACTCTTGTGAGGATATGTTGATAGAGGACTGTTACATAAGTGTGGGAGATGATGCAATTGCAATAAAAAGTGGCTGGGATCAGTATGGAATTGCTTATGGAAGGCCTTCCACGAATATAATGATCCGAAACCTTGTTGTTCGCTCTATGGTCAGTGCTGGCATCTCAATAGGAAGTGAGATGTCTGGCGGGGTATCCAACGTCACAGTTGAGAATCTTGTTATATGGGATTCTAGGCGTGGTGTGAGGATCAAGACAGCCCCTGGACGAGGAGCATATGTGCGCCAAATAACTTATCGGAATATAACACTTGAGAATGTTCGTGTTGGAATTGTTATGAAGACAGATTACAATGAACACCCTGATGATGGGTATGACCCTGCGGCACTCCCAATTCTCAGAGACATAAGCTTTACCACAGTCCATGGCCAAGGAGTTCGGGTGCCAGTACGTATACACGGTAGTGAAGAGATTCCTGTTAGAAATGTGACTTTTCAAGACATGTCAGTTGGTCTAACCTACAAGAAGAAGCATATCTTTCAGTGTGCATTTGTTCAAGGCCGTGTAATAGGTACCATCTATCCTGCTCCCTGTGAGAACCTTGATCGATACAATGAGCAAGGACAGTTGGTTAAGCATTCTGCGTTCCAGAATGTAACAGATATTGATTATGATTTTTGA 1500 0.4673 MVETSTLGRFQQQRLDLRRWLPTFLTSHKTLLTVLWIAAFASVFVWQRNIVGGFLVYSGIPASPMPKLRPMAFNLTDFGGVGDGVTLNTQAFERAVSAISKFGKKGGAQLNVPPGRWLTAPFNLTSHMTLFLAQDAVILGIDDEKYWPLMPPLPSYGYGREHPGPRYGSLIHGQHLKDIVITGHNGTINGQGQAWWKKYRQKRLNHTRGPLVQIMFSSDIVFTNITLRDSPFWTLHPYDCKNITIKGVTILAPVLDAPNTDGIDPGKQNQAGIDSCEDMLIEDCYISVGDDAIAIKSGWDQYGIAYGRPSTNIMIRNLVVRSMVSAGISIGSEMSGGVSNVTVENLVIWDSRRGVRIKTAPGRGAYVRQITYRNITLENVRVGIVMKTDYNEHPDDGYDPAALPILRDISFTTVHGQGVRVPVRIHGSEEIPVRNVTFQDMSVGLTYKKKHIFQCAFVQGRVIGTIYPAPCENLDRYNEQGQLVKHSAFQNVTDIDYDF 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2168 499 PANTHER PECTIN LYASE-RELATED 22 497 - -
Aed6g2168 499 Gene3D - 60 461 IPR012334 -
Aed6g2168 499 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 22 497 - -
Aed6g2168 499 SUPERFAMILY Pectin lyase-like 59 473 IPR011050 -
Aed6g2168 499 SMART pbh1 310 332 IPR006626 -
Aed6g2168 499 SMART pbh1 428 449 IPR006626 -
Aed6g2168 499 SMART pbh1 367 388 IPR006626 -
Aed6g2168 499 SMART pbh1 338 359 IPR006626 -
Aed6g2168 499 SMART pbh1 276 297 IPR006626 -
Aed6g2168 499 SMART pbh1 240 267 IPR006626 -
Aed6g2168 499 Pfam Glycosyl hydrolases family 28 168 458 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2168 Aed-Chr6 23993046 23998385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2168 1 498 Glycoside Hydrolase AT1G19170 73.099 0.0 766
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2168 - - gmx:100818529 958.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2168 6 23993046 23998385 Aed6g2168 6 23993046 23998385 ECH
Aed6g2168 6 23993046 23998385 Aed4g0974 4 8896982 8903645 PCT