Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0974 ATGGTGGAGAACACAGAGCCAGGAGGTGGGAGAGGGATACTCGTGTGGTTGCAGTTATTATTCCACCACCCCAAAACGGCGCCGTTCGGGTCTCACAAGACGCTGTTCGCGTTCCTGTGGGTGGCCACGCTGGCGACGGTGTTCGTGTGGCAGAGCAGCAGCATCAGCGGGTTTCTGGTACTGGGCGGCGTGCCGGCGGGACTGCCGCCGAAGCTGCGGCCGGTGGTGTTCTGTATCACGGAGTTCGGCGGCGTGGGCGACGGCGTTACACTGAACACTGAGGCGTTTGAGAGAGGCGTTGCTGCGATTTCCAAGTTGGGGAGTAAGGGTGGCGGTCAACTGAATGTTCCACCTGGGCGGTGGCTCACTGCGCCGTTCAATCTGACCAGTCATATCACTCTTTTTCTTGCCAGAGATGCTGTCATACTTGCAATTCAGGATGAAAAGTATTGGCCACTGATGCCTGCATTGCCTTCATATGGGTATGGAAGGGAGCATCCTGGGCCTCGATATACCAGTTTAATTCATGGTCAAAATCTTAGAGATGTTGTCATAACGGGGCACAATGGTACCATAAATGGACAGGGACAAACATGGTGGACAAAGTATCGCCAGAAGCTTCTCAACCACACAAGGGGGCCACTTGTTCAGATATTATGGTCTACTAACATTGTGATCTCAAATATTACTCTGCGTGATTCTCCTTTTTGGACACTTCATCCATATGATTGCAAAAATGTTACGATAAAAAATGTTACTATTTTGGCTCCTGACTGTTACATAAGTGTGGGGGATGATGCAATTGCAATAAAAAGTGGCTGGGATCAATATGGCATTACTTATGGAAGGCCTTCCAAGAATATAGTAATTCGAAACCTTGTTGTTCGCTCTAATGTCAGTGCTGGAATCTCAATAGGCAGCGAGATGTCTGGTGGAGTATCCAACATCCTGATAGAAAACATCCTCGTATGGGAATCAAGGCGTGCCATGAGAATCAAAACCGCACCAGGAAGAGGTGGATACGTGCGCCAAATAACCTACAAAAACCTAACCTTAAAAAACGTGCGCGTTGGCATTGTCATCAAGACAGATTACAACGAACACCCCGGCGGTGGATATGATCCTAGGGCACTCCCAATCCTCAGGGACATCAGCTTCATCAACATCCGCGGCCGAGGGGTTCGCGTGCCGGTCCGAATACAAGGCAGTGAAAAGATTCCGGTTAGGAATGTCACTTTCCAGGATATGAAGGTTGGCATAACTTTCAAGAAGAAGCATGTCTTTCAGTGTGCCTTTGTACAAGGTCAAGCAATAGGGACAATCTTTCCTTCTCCATGTGACAGCTTTGATCGCTACAATGAACAAGGACAGCTTGTTAAGCATGCTGCTACACAGAATGTAACAGATATAGATTATGAAATTTGA 1425 0.4835 MVENTEPGGGRGILVWLQLLFHHPKTAPFGSHKTLFAFLWVATLATVFVWQSSSISGFLVLGGVPAGLPPKLRPVVFCITEFGGVGDGVTLNTEAFERGVAAISKLGSKGGGQLNVPPGRWLTAPFNLTSHITLFLARDAVILAIQDEKYWPLMPALPSYGYGREHPGPRYTSLIHGQNLRDVVITGHNGTINGQGQTWWTKYRQKLLNHTRGPLVQILWSTNIVISNITLRDSPFWTLHPYDCKNVTIKNVTILAPDCYISVGDDAIAIKSGWDQYGITYGRPSKNIVIRNLVVRSNVSAGISIGSEMSGGVSNILIENILVWESRRAMRIKTAPGRGGYVRQITYKNLTLKNVRVGIVIKTDYNEHPGGGYDPRALPILRDISFINIRGRGVRVPVRIQGSEKIPVRNVTFQDMKVGITFKKKHVFQCAFVQGQAIGTIFPSPCDSFDRYNEQGQLVKHAATQNVTDIDYEI 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0974 474 PANTHER PECTIN LYASE-RELATED 258 472 - -
Aed4g0974 474 PANTHER PECTIN LYASE-RELATED 25 257 - -
Aed4g0974 474 Pfam Glycosyl hydrolases family 28 258 434 IPR000743 GO:0004650|GO:0005975
Aed4g0974 474 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 258 472 - -
Aed4g0974 474 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 25 257 - -
Aed4g0974 474 SMART pbh1 342 363 IPR006626 -
Aed4g0974 474 SMART pbh1 244 272 IPR006626 -
Aed4g0974 474 SMART pbh1 313 334 IPR006626 -
Aed4g0974 474 SMART pbh1 403 424 IPR006626 -
Aed4g0974 474 SMART pbh1 285 307 IPR006626 -
Aed4g0974 474 SUPERFAMILY Pectin lyase-like 68 447 IPR011050 -
Aed4g0974 474 Gene3D - 67 436 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0974 Aed-Chr4 8896982 8903645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0974 29 474 Glycoside Hydrolase AT3G42950 68.476 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0974 - - gmx:100791187 878.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2168 6 23993046 23998385 Aed4g0974 4 8896982 8903645 PCT