Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2149 ATGATTCTCATTATCTCCCTCATTTTTTCTCTTCTCTCATTCTCCCATGCTTCTGTCCTAGATTTCTGTGTTGCAGATTATGCAGGTCCAATTGGCCCTGCAGGATATTCATGCAAGAAGCCTGCAAAGGTCACAGCAGATGATTTTGCTTACAGTGGCCTTGGCATTGCTGGCAACACCGCAAACATTATCAAAGCTGCAGTGACTCCTGCATTTGATGCTCAGTTTGCTGGTCTCAACGGCCTCGGAATTTCCGCGGCACGCTTGGACTTGGCACCAGGTGGAGTCATACCACTTCACACTCATCCTGGAGCTTCAGAATTACTGGTTGTAATAGAAGGGAGCATCTTGGCTGGATTCATTTCTTCTGCTAACACTGTTTACCTCAAAACTCTCAAGAAGGGAGATGTTATGGTATTCCCTCAAGGCTTGCTTCACTTCCAAATCAATGCAGGTAAAACTCCAGCCCTGGCAATTGTAAGCTTCAGTAGCTCCAATCCTGGTCTGCAAATTCTGGACTTTGCTTTGTTCAAAAGTAGTTTCCCCACACCATTGATAGTGCAAACCACTTTCCTTGATGCTGCTCTTGTGAAGAAGCTTAAGGGTGTTCTTGGAGGTTCAGGCTAA 627 0.4561 MILIISLIFSLLSFSHASVLDFCVADYAGPIGPAGYSCKKPAKVTADDFAYSGLGIAGNTANIIKAAVTPAFDAQFAGLNGLGISAARLDLAPGGVIPLHTHPGASELLVVIEGSILAGFISSANTVYLKTLKKGDVMVFPQGLLHFQINAGKTPALAIVSFSSSNPGLQILDFALFKSSFPTPLIVQTTFLDAALVKKLKGVLGGSG 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2149 208 CDD cupin_OxOx 15 204 - -
Aed6g2149 208 Pfam Cupin 56 189 IPR006045 -
Aed6g2149 208 Gene3D Jelly Rolls 16 207 IPR014710 -
Aed6g2149 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 5 204 - -
Aed6g2149 208 ProSitePatterns Germin family signature. 95 108 IPR019780 GO:0030145
Aed6g2149 208 SUPERFAMILY RmlC-like cupins 18 201 IPR011051 -
Aed6g2149 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 5 204 - -
Aed6g2149 208 PRINTS Germin signature 130 150 IPR001929 GO:0030145
Aed6g2149 208 PRINTS Germin signature 163 178 IPR001929 GO:0030145
Aed6g2149 208 PRINTS Germin signature 100 120 IPR001929 GO:0030145
Aed6g2149 208 SMART Cupin_1_3 52 198 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2149 Aed-Chr6 23878651 23879277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g2149 1 207 Miscellaneous Gene Families AT5G20630 70.673 1.61e-99 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2149 - - gmx:100800387 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2149 6 23878651 23879277 Aed6g2149 6 23878651 23879277 ECH
Aed6g2149 6 23878651 23879277 Aed4g0949 4 8698889 8699527 PCT