Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0949 ATGAAGAAGATGATTCCAACCCTCTTCTTCATCATTCTCTCCCTCATCTCTCACTCCCACGCCTCCGTGCTGGATTTCTGCGTGGCAGACTACACAGCCCCCAACGGCCCGGCAGGGTACTCCTGCAAGAGCCCCGCCAAGGTCACAGTAGACGACTTCGTCTACTCCGGCCTTGGTGCGGCCGGCAACACCTCGAACATCATCAAGGCGGCCGTGACGCCGGCCTTCGACGCACAGTTCCCCGGCGTCAACGGCCTGGGGATCTCCGTTGCACGCCTTGACCTGGCGCCCGACGGAGTGATCCCCCTTCACACGCACCCCGGCGCCTCAGAGCTGATCGTGGTCGTGGAGGGGTCGATCTGCACGGGCTTTGTGGCTTCGGACAACACCGTGTATCTGAAAACTCTGGGGAAGGGTGATGTGATGGTGTACCCTCAGGGGTTGCTGCATTTCCAGATCAACGATGGAGAGTCTGAGGCTTTGGCGTTTGTGAGCTTCAGCAGCGCGAACCCTGGGCTTCAGATTCTGGATTTTGCTTTGTTTAAGAGTGATTTTCCGACTGAGCTTATTACGCAGACCACTTTCATTGATGCTGCTGTTGTCAAGAAGCTCAAGGGCGTTCTTGGAGGATCAGGTTAA 639 0.5696 MKKMIPTLFFIILSLISHSHASVLDFCVADYTAPNGPAGYSCKSPAKVTVDDFVYSGLGAAGNTSNIIKAAVTPAFDAQFPGVNGLGISVARLDLAPDGVIPLHTHPGASELIVVVEGSICTGFVASDNTVYLKTLGKGDVMVYPQGLLHFQINDGESEALAFVSFSSANPGLQILDFALFKSDFPTELITQTTFIDAAVVKKLKGVLGGSG 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0949 212 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 9 208 - -
Aed4g0949 212 CDD cupin_OxOx 19 208 - -
Aed4g0949 212 SMART Cupin_1_3 56 202 IPR006045 -
Aed4g0949 212 Pfam Cupin 58 200 IPR006045 -
Aed4g0949 212 ProSitePatterns Germin family signature. 99 112 IPR019780 GO:0030145
Aed4g0949 212 Gene3D Jelly Rolls 20 211 IPR014710 -
Aed4g0949 212 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 9 208 - -
Aed4g0949 212 SUPERFAMILY RmlC-like cupins 22 205 IPR011051 -
Aed4g0949 212 PRINTS Germin signature 167 182 IPR001929 GO:0030145
Aed4g0949 212 PRINTS Germin signature 104 124 IPR001929 GO:0030145
Aed4g0949 212 PRINTS Germin signature 134 154 IPR001929 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0949 Aed-Chr4 8698889 8699527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0949 3 211 Miscellaneous Gene Families AT5G20630 65.550 4.37e-98 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0949 - - gmx:100806553 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0949 4 8698889 8699527 Aed4g0949 4 8698889 8699527 ECH
Aed6g2149 6 23878651 23879277 Aed4g0949 4 8698889 8699527 PCT