LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed6g2085	ATGACAAGTAAGATATTTCTTGTCCTTCTGATCACAACTTTTGTGGTTGCAGCCTTTGCTGGTAACTTCAACCAAGACTTTGAGATAACATGGGGTGATGGTCGTGCCAAAATCCTCAACAGTGGGGAACTTCTCACCTTGTCCCTAGACAAGACCTCTGGCTCTGGATTTCGTTCTAGGAATGAGTACTTGTTTGGAAAAATTGACATGCAACTAAAACTCGTGCCTGGTAACTCTGCAGGCACAGTCACAGCTTATTATCTATCTTCTCTTGGGAATACTCATGATGAAATAGATTTTGAATTTCTGGGTAATTTGAGTGGTGATCCTTATATTCTTCACACAAACGTATTCACACAAGGGAAAGGTAACAGGGAACAACAGTTCTATCTGTGGTTCGACCCCACCAAGGACTTCCACACATATTCCATTCTTTGGAATCCTCAGAGCATCATATTCTCAGTGGATGGGACACCCATAAGAGAGTTCAAGAATCTAGAATCAAAAGGGGTTTCTTTTCCAAAAAACCAAGCCATGAGGATATATTCAAGCCTTTGGAACGCAGATGATTGGGCCACAAGAGGAGGCCTAGTGAAGACAGATTGGAGCCAAGCCCCATTCACAGCCTCATACAGAAAATTCAATTCAGAAGCATGTGTATGGAGTTCTTCATCAGGCTCATCTTGCTCCTCCAACAATCCATCATCATGGTTGAAACAATCATTGGATGCAACAGGGCAAGCCAGAATTCAATGGGTGCAAAAGAACTACATGATTTACAACTACTGCACTGATACTAAGCGATTCCCACAGGGCCTTCCTCCCGAATGCACAATCGCATCAAAACAAAATTAG	855	0.4257	MTSKIFLVLLITTFVVAAFAGNFNQDFEITWGDGRAKILNSGELLTLSLDKTSGSGFRSRNEYLFGKIDMQLKLVPGNSAGTVTAYYLSSLGNTHDEIDFEFLGNLSGDPYILHTNVFTQGKGNREQQFYLWFDPTKDFHTYSILWNPQSIIFSVDGTPIREFKNLESKGVSFPKNQAMRIYSSLWNADDWATRGGLVKTDWSQAPFTASYRKFNSEACVWSSSSGSSCSSNNPSSWLKQSLDATGQARIQWVQKNYMIYNYCTDTKRFPQGLPPECTIASKQN	284

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed6g2085	284	PIRSF	EndGlu_transf	1	282	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Aed6g2085	284	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	17	211	IPR000757	GO:0004553\|GO:0005975
	Aed6g2085	284	PRINTS	Glycosyl hydrolase family 16 signature	113	126	IPR008264	GO:0004553\|GO:0005975
	Aed6g2085	284	PRINTS	Glycosyl hydrolase family 16 signature	131	148	IPR008264	GO:0004553\|GO:0005975
	Aed6g2085	284	PRINTS	Glycosyl hydrolase family 16 signature	55	73	IPR008264	GO:0004553\|GO:0005975
	Aed6g2085	284	Gene3D	-	9	282	-	-
	Aed6g2085	284	CDD	GH16_XET	20	277	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Aed6g2085	284	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE	7	279	-	-
	Aed6g2085	284	SUPERFAMILY	Concanavalin A-like lectins/glucanases	22	279	IPR013320	-
	Aed6g2085	284	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	97	107	IPR008263	GO:0004553\|GO:0005975
	Aed6g2085	284	Pfam	Glycosyl hydrolases family 16	24	203	IPR000757	GO:0004553\|GO:0005975
	Aed6g2085	284	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	233	277	IPR010713	GO:0005618\|GO:0006073\|GO:0016762\|GO:0048046
	Aed6g2085	284	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	7	279	IPR044791	GO:0004553

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed6g2085	Aed-Chr6	23459123	23460663	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed6g2085	6	280	Glycoside Hydrolase	AT4G25810	73.381	4.55e-155	432

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed6g2085	K14504		-	gmx:100807063	546.584

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed6g2085	6	23459123	23460663	Aed4g0890	4	8071490	8073340	PCT