Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0890 ATGTTAAAATTATTTTATATATTGTCACCAATACCAACCAACAAATTAAGGTATCATCATATCATAGCATCTCCAAATGAAAATTATTGGGTTGTTTTTCTTGTGGTGGCCACTTTTGTGGTGGCAGCCACCGCTGCAGGTAGCTTCTTCCAGGACTTTGAAATAACATGGGGTGGTGAGCGTGCAAAAATCTATGAAAATGGACAAGCTCTTTCTCTGTCCCTAGACAGAGCCTCTGGCTCTGGCTTTCGTTCCAAAAAAGAGTACTTGTTCGGAAAAATTGACATGCAGCTTAAGCTTGTGCCTGGTAACTCTGCCGGCACTGTCACGGCCTATTATTTATCTTCTCTGGGGCCTACTCATGACGAGATAGACTTTGAGTTTTTGGGTAACTTGAGTGGTGATCCTTACACTCTTCACACGAACGTATTCAGTCAAGGGAAAGGCAACAGAGAACAACAGTTCCATCTATGGTTCGACCCCACCATCGACTTCCACACATACACTGTTCAATGGAATCCTGCAAGCATCATGGAGTTCAAGAACTTGGAGACAAAGGGGGTTCCATTCCCAAAGAACCAAGCCATGAGAATATACTCAAGCCTATGGAACGCAGAGGAATGGGCCACAAGGGGTGGGCTTGTCAAAACGGATTGGAGCAAGGCCCCATTCACGGCCTCATATAGAAACTTCAACGCCCAAGCCCCTTCCTCCACTGGCCAATCACTCGACGCCACGGGGCAGGCCAAGATCCGTTGGGTCCAAAAGAATTACATGATCTACAACTACTGCACTGACACCAGACGCTTCTCACAAGGCTTCCCTCCAGAATGTTCCATTGCATGA 846 0.4622 MLKLFYILSPIPTNKLRYHHIIASPNENYWVVFLVVATFVVAATAAGSFFQDFEITWGGERAKIYENGQALSLSLDRASGSGFRSKKEYLFGKIDMQLKLVPGNSAGTVTAYYLSSLGPTHDEIDFEFLGNLSGDPYTLHTNVFSQGKGNREQQFHLWFDPTIDFHTYTVQWNPASIMEFKNLETKGVPFPKNQAMRIYSSLWNAEEWATRGGLVKTDWSKAPFTASYRNFNAQAPSSTGQSLDATGQAKIRWVQKNYMIYNYCTDTRRFSQGFPPECSIA 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0890 281 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 239 278 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Aed4g0890 281 ProSitePatterns Glycosyl hydrolases family 16 active sites. 123 133 IPR008263 GO:0004553|GO:0005975
Aed4g0890 281 Gene3D - 35 280 - -
Aed4g0890 281 SUPERFAMILY Concanavalin A-like lectins/glucanases 52 280 IPR013320 -
Aed4g0890 281 PIRSF EndGlu_transf 16 243 IPR016455 GO:0010411|GO:0016762|GO:0042546
Aed4g0890 281 PIRSF EndGlu_transf 236 281 IPR016455 GO:0010411|GO:0016762|GO:0042546
Aed4g0890 281 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 4 228 IPR000757 GO:0004553|GO:0005975
Aed4g0890 281 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 32 280 - -
Aed4g0890 281 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 32 280 IPR044791 GO:0004553
Aed4g0890 281 Pfam Glycosyl hydrolases family 16 51 221 IPR000757 GO:0004553|GO:0005975
Aed4g0890 281 CDD GH16_XET 47 278 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0890 Aed-Chr4 8071490 8073340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0890 31 281 Glycoside Hydrolase AT4G25810 64.516 1.97e-128 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0890 K14504 K08235 gmx:732603 468.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2085 6 23459123 23460663 Aed4g0890 4 8071490 8073340 PCT