Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2058 ATGGCCACCCTCGACCCAATCCAAAACGGTATCTCTTCGGACAATTCCGCAGACGTGGAACCGCCCTCCACCACCGCCGATGACCCCGCGCCCGATGCCGCCGCCGAGAAGCGGTGGCCGGGGTGGCCCGGCCACTGCGTGTTCCGCCTCATCGTGCCGGTCCTTAAAGTTGGCAGCATCATCGGGCGCAAGGGGGAGCTCATAAAAAAAACCTGCGAGGAAACGAAAGCTCGCATTCGGGTCCTCGTCGGCGCCGTTGGCACCACCGATCGAATCGTTACAAGTTGGAATCTTTGTGCTCGCGCGTTTTGGTTTCAGCTCAATGCTATCTGTGAGGTGGTTTCTTTGTGGGGTTATATAGGGCTTAAATTCTTAGGCACGGGACATGTTGGTGCCATGGGTGGTTCTAACTGTACCCGCAGTGTTAAGGTACTCATATCGGGAAAGGAAGAGCCAGAGGCACCTCTTTCTCCTGCCTTGGATGCTGTAATAAGGGTTTTTAAACGTGTCTCAGGGTTATCTGAAATTGATGCAGAGAATAAAGCATCAGTGGTTGCATTTTGTTCTTTCCGTTTATTGGTGGCCTCAACACAGGCTATCAATTTGATTGGAAAGCAGGGCTCACTAATTAAATCTATACAGGAAAATACCGGGGCTTCTGTTAGAGTACTGTCTGGAGGTGTGCCTGCTGTCCCTGTTCCCTTTTATGCTGCTGCGGATGAGAGGATTGTGGAACTGCAGGGGGAAGCCATGAAGGTCCTTAAGGCTTTGGAAGCAGTAGTTGGGCACCTGAGGAAGTTTTTGGTTGATCATAGTGTTCTTCCCTTATTTGAGAAAACTTACAATGCAACATTCTCCCAAGAGCGCCAGGCAGATACTACCTGGGTTGACAAACCATCACTGCATAGTGCTTCACAACCTAGCATTGTAAATGATATTCCTCTTTCAACAAAAAGGGATTCTCTCTATTCTGACCGTGAAAGTCAGTTGGATTCATTGTTCCCTCCCTCCACAATGTCAATATATGGGCAAGATTCTTCACTTTCTGGTCTTCGTTCTTCAGCTCTCAGTCGACCTGGTGCTCCTCCTATTGTTACAACGGTAATACAAACAATGCAAATACCACTGTCCTATGCAGAGGACATCATTGGTATACAAGGCACTAATATTGAGTACATTCGCCGTACTAGTGGAGCCATATTGACTGTTCAGGAGAGCCGGGTGCCTGATGAAATCATTGTGGAAATAAAAGGCACCTCATCTCAGGTTCAAACAGCACAACAATTGATTCAGGAAGTTATAACTAATCACAAAGAACCTGTTGCTAGTAACTATAGCAGGTTAGATACAGGCCTGAGGTCTTCTTACCCTCAGTTGGGTAGTTCATCGTATTCCTCATCTTCCTTGTCGTCGCAACCCTACAGCGGGTATGGATCTTCTGCTTCTGGTCTTGGAGGCTATAGTACTTTCAGACTTTGA 1479 0.4794 MATLDPIQNGISSDNSADVEPPSTTADDPAPDAAAEKRWPGWPGHCVFRLIVPVLKVGSIIGRKGELIKKTCEETKARIRVLVGAVGTTDRIVTSWNLCARAFWFQLNAICEVVSLWGYIGLKFLGTGHVGAMGGSNCTRSVKVLISGKEEPEAPLSPALDAVIRVFKRVSGLSEIDAENKASVVAFCSFRLLVASTQAINLIGKQGSLIKSIQENTGASVRVLSGGVPAVPVPFYAAADERIVELQGEAMKVLKALEAVVGHLRKFLVDHSVLPLFEKTYNATFSQERQADTTWVDKPSLHSASQPSIVNDIPLSTKRDSLYSDRESQLDSLFPPSTMSIYGQDSSLSGLRSSALSRPGAPPIVTTVIQTMQIPLSYAEDIIGIQGTNIEYIRRTSGAILTVQESRVPDEIIVEIKGTSSQVQTAQQLIQEVITNHKEPVASNYSRLDTGLRSSYPQLGSSSYSSSSLSSQPYSGYGSSASGLGGYSTFRL 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2058 492 ProSiteProfiles Type-1 KH domain profile. 367 430 - -
Aed6g2058 492 CDD PCBP_like_KH 47 94 - -
Aed6g2058 492 CDD PCBP_like_KH 189 261 - -
Aed6g2058 492 Pfam KH domain 191 260 IPR004088 GO:0003723
Aed6g2058 492 Pfam KH domain 370 432 IPR004088 GO:0003723
Aed6g2058 492 Pfam KH domain 48 94 IPR004088 GO:0003723
Aed6g2058 492 Gene3D K Homology domain, type 1 188 267 IPR036612 GO:0003723
Aed6g2058 492 Gene3D K Homology domain, type 1 365 440 IPR036612 GO:0003723
Aed6g2058 492 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER 140 479 - -
Aed6g2058 492 MobiDBLite consensus disorder prediction 1 38 - -
Aed6g2058 492 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 39 94 IPR036612 GO:0003723
Aed6g2058 492 SMART kh_6 186 265 IPR004087 GO:0003676
Aed6g2058 492 SMART kh_6 44 168 IPR004087 GO:0003676
Aed6g2058 492 SMART kh_6 366 435 IPR004087 GO:0003676
Aed6g2058 492 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 183 272 IPR036612 GO:0003723
Aed6g2058 492 CDD KH-I 369 431 - -
Aed6g2058 492 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER 33 93 - -
Aed6g2058 492 Gene3D K Homology domain, type 1 45 96 IPR036612 GO:0003723
Aed6g2058 492 ProSiteProfiles Type-1 KH domain profile. 187 260 - -
Aed6g2058 492 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 140 479 - -
Aed6g2058 492 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 33 93 - -
Aed6g2058 492 MobiDBLite consensus disorder prediction 1 22 - -
Aed6g2058 492 ProSiteProfiles Type-1 KH domain profile. 45 81 - -
Aed6g2058 492 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 362 436 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2058 Aed-Chr6 23284508 23289738 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2058 K21444 - gmx:100802089 659.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2058 6 23284508 23289738 Aed6g2058 6 23284508 23289738 ECH
Aed6g2058 6 23284508 23289738 Aed4g0863 4 7697703 7703252 PCT