Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0863 ATGACCACCGCCGAACCACTCCAGAACGGCACCGCCGGAAGCCCACTCCCGCCGGACAATGTCTCCGCCGTGCAACCGCCCACGGAGAATGAAGCCGACACCGCCGCCGCGGCGTCCACTCCAACGGAGAAGCGGTGGCCGGGGTGGCCCGGGGACTGCGTGTTCCGGCTCATCGTGCCGATGGGGAAAGTCGGAAGCATCATTGGGCGTAAGGGGGAGCTCATAAAGAAGATGTGCGAGGAAACTGGATCTCGCATTCGCGTCCTCGACGCTCCTCTCGGCACTCCTGATCGAATTGTACTTGTATCTGGGAAGGAAGAGCTAGAAGCAGCTCTTTCCCCTGCAATGGATGCTGTAATAAGGATATTCAAGCGTGTCTCTGGATTATCTGAAACTGATGCCGAGAATAAAGAATCTGCTACTGGTCTTGCATTTTGTTCTATCCGTTTACTGGTGGCATCAACACAGGCTATCAATTTAATTGGAAAGCAAGGCTCGTTAATAAAATCTATTCAGGAGAATACCAGTGCTTCAGTTAGAGTGCTGTCAGGAGATGAGGTACAATTTTATGCTACTATGGATGAGAGGATTGTGGAAATTCAGGGAGAAGCCTTGAAGGTGCTTAAAGCTCTGGAAGCAGTAGTTGGCCATCTGAGGAAATTTTTGGTTGATCATAGTGTTCTTCCCCTATTTGAGAAAACTTACAATGCCCCTACCTCACAAGACCGTCAAGCAGAGACCTGGTCTGACAAGTCACTGCTGCATACTACTTCACGTTCTAGCATATTTTCTGACATTCCTCTTTCAACAAAAAGGGATTCTGTCTTATCTGACCGTGAAAGCCAATTGGACTCATATCTCCCTTCCTCCACTATGTCTTTCTATGGGCAGGATTCTTCACTTTCTGGTGTTCGTTCTTCAGCCCTTGGCCGTGTTGGTGCTCCCATTGTTACTACGGTAATACAAACAATGCAAATACCACTATCCTACGCAGAAGACATCATTGGTATTCAAGGGACTAACATTGAATACATTCGCCGCACTAGTGGAGCCATATTAACTGTGCAGGAGAGCAGGGTGCCTGATGAAATCGTTGTAGAAATAAAGGGCACCTCATCTGAGGTTCAAACAGCACAACAATTGATTCAGGATGTTATAAGCAGTCACAATGAACCTGTCAGTAGCAGTTATGGCAGGCTAGATGCAGGTCCAAGGTCTTCATACTCTCAGTTGGGCAATACATCACGCCTCCCATCTTCGTTGTCCTCACAACCATACACAGGCTATGGAGCTTCTGGTTTAGGAGACTACAGTACTTTCAGGCTTTAA 1329 0.4808 MTTAEPLQNGTAGSPLPPDNVSAVQPPTENEADTAAAASTPTEKRWPGWPGDCVFRLIVPMGKVGSIIGRKGELIKKMCEETGSRIRVLDAPLGTPDRIVLVSGKEELEAALSPAMDAVIRIFKRVSGLSETDAENKESATGLAFCSIRLLVASTQAINLIGKQGSLIKSIQENTSASVRVLSGDEVQFYATMDERIVEIQGEALKVLKALEAVVGHLRKFLVDHSVLPLFEKTYNAPTSQDRQAETWSDKSLLHTTSRSSIFSDIPLSTKRDSVLSDRESQLDSYLPSSTMSFYGQDSSLSGVRSSALGRVGAPIVTTVIQTMQIPLSYAEDIIGIQGTNIEYIRRTSGAILTVQESRVPDEIVVEIKGTSSEVQTAQQLIQDVISSHNEPVSSSYGRLDAGPRSSYSQLGNTSRLPSSLSSQPYTGYGASGLGDYSTFRL 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0863 442 ProSiteProfiles Type-1 KH domain profile. 319 382 - -
Aed4g0863 442 Pfam KH domain 55 112 IPR004088 GO:0003723
Aed4g0863 442 Pfam KH domain 148 214 IPR004088 GO:0003723
Aed4g0863 442 Pfam KH domain 322 384 IPR004088 GO:0003723
Aed4g0863 442 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 142 226 IPR036612 GO:0003723
Aed4g0863 442 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 315 388 IPR036612 GO:0003723
Aed4g0863 442 MobiDBLite consensus disorder prediction 1 37 - -
Aed4g0863 442 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER 40 431 - -
Aed4g0863 442 Gene3D K Homology domain, type 1 318 392 IPR036612 GO:0003723
Aed4g0863 442 ProSiteProfiles Type-1 KH domain profile. 145 214 - -
Aed4g0863 442 CDD KH-I 321 383 - -
Aed4g0863 442 Gene3D K Homology domain, type 1 52 124 IPR036612 GO:0003723
Aed4g0863 442 Gene3D K Homology domain, type 1 146 221 IPR036612 GO:0003723
Aed4g0863 442 MobiDBLite consensus disorder prediction 1 45 - -
Aed4g0863 442 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 40 431 - -
Aed4g0863 442 SMART kh_6 318 387 IPR004087 GO:0003676
Aed4g0863 442 SMART kh_6 144 219 IPR004087 GO:0003676
Aed4g0863 442 SMART kh_6 51 124 IPR004087 GO:0003676
Aed4g0863 442 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 46 107 IPR036612 GO:0003723
Aed4g0863 442 CDD PCBP_like_KH 147 215 - -
Aed4g0863 442 MobiDBLite consensus disorder prediction 390 425 - -
Aed4g0863 442 CDD PCBP_like_KH 54 123 - -
Aed4g0863 442 ProSiteProfiles Type-1 KH domain profile. 52 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0863 Aed-Chr4 7697703 7703252 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0863 K21444 - gmx:100815466 790.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0863 4 7697703 7703252 Aed4g0863 4 7697703 7703252 ECH
Aed6g2058 6 23284508 23289738 Aed4g0863 4 7697703 7703252 PCT