Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g2041 ATGGCTACCGAGAGTCCAATTAGGATTTCAGAAGCTGGGGGTAAATGGCCGTCTCTTAAGGAAGCTGCAACTTTTGGTTCACCATCCCGCCACATGGCAACAGAGGATCTGGGTATATTTTTGAATGGCCATAGATTTCATGGCAGTGGAAAGGATGCAGTACCCAACCGCAGTGGCAGTGCGCCTCCAAGCATGGAAGGCTCATTTCTGGCCATAGAAAACTTGTTATCCCAGAACACCACCCGGAATGCGAGCTCAGGATCTCTGAACAGAGCTATGCAAAAATATGACAGTGGTAAAGGGTCTTTTCATTTGTCGCGGGGAACTCTTGCAACGCACAAGGAGGAGTCTGAAGATGATTCGACCCAACAGCTGTATGATAATGAGTTAAACAAAGCTAGTGGAAAATGGCATAGACAGGATGTGGCTTCAACATCATTTCAGCATAAAAATTTAGTACTGGAAGATCTTCCCCAAAACATGTCACCTGTATATAATAAGTCTCTTGGAGTGGTGGATGAACTAATTGACGTAGATACTGGTTCCAGTTCTTCTCATTACCCTCCTGTCACTACAGTGGATGCTGTAAAACCTACCAATGGTGCAGATGATATAAGGCTGTCATCAACTGTTGATTCCCCTGCCCCTGTCACAAGCTCATCATCTCTCAATTCCACTGGGAGCATGGGTTTTAATGACTTAGATGTTACAATTGTAGAATCTCAATTAAGGGCTCTTAATGTATCTAATCTACCAAATTCAGAAAGCCAGAGTTATGAAGATAAATGGAAAAATAGCTACCAGAATAATTTAATGCAAATGCAACACCAGCAACAAAACTATCAATTTGAAGTGCCTAGCACCAATTCTCAAAGTGAAAAATATGCATACGTTGGTATGGAACAGTTTCTTCACAATCCCAGCAAGTTCTCCTCTGATGTCCAGCCTGTACTGCAATCATCAGGATATACACCTCCACTGTATGCTACAGCAGCGGCTTATATGACCTCAACAAATCCGTTTTACTCTAATTTGCAGGCTTCGGGTATATATTCTCCGCAATATGTAGGTGCATACCCTTTTAGTCCCACAGCTGTTCCTCCATATATTGCTGCATACCCTCATGGTTCTGTACCACTTGTTGATGGGGCTACTGGTTCTAGTTTTACTCCCCAAGCACCAGGGGTTTCTTCTACTGCAGGAAACATTTCACACGGAGCTGAAATGATGCATGCAAACAAGTTTTTTGGTCAATTTGGATTTCCTCTGCAGCCTTCTTTTGGCGATCCTATTTACATGCAATATCATCAACAACCTTTTGTTGAGGGATATGGTGTATCTGGTCATCTGCTGGCACCTAGAGCCAGTGTTGGTGGCCAAATTGGTCCTTTTGATTCCCAAAAAAGGCCCACTAGTGGTGCTTACTTGGATGACAAAAAATTACATAATCAGAGAAGTGGTGCTAATTCTAATAGAGATGGGCTAATACATCCTGGTTATTTTGGACACCCTTCAAATATGGGTTTCGTAACCCAGTATCCAAGTTCCCCACTTTCTAGACCAGTTTTGTCAGGATATCCAGAAAGTAGTCCTGGCCTTCTAGGGGGAAGGAATGAAATGAAACTCTCTCCAGCTTCTGGTAGAAATGGAGGTTTATTATCTGGATGGCAAGGTCAAAGTGCCTTTGACAGTGGTGCTCACGACCCCAAAATTGCTATTTTTCTTGAGGAGTTAAAATCTGGCAAAGGCCGCAGATTTGAGCTATCTGATATTATTGGACATATAGTTGATTTTAGGCAACATGGGAGCCGTTTTATACAGCAGAAGTTGGAAAGCTGTGGTGTTGAAGAGAAGGAGTTAGTGTTCAAAGAGGTTCTTCCCCACACATCTAAATTGATGACTGATGTATTTGGCAATTATGTAATCCAGAAGTTTTTTGAGTATGGAAGCCCTGAGCAGAGGAAGGATCTTGCAAATCGACTCCTTGGACAGATACTGCCTTTAAGTCTGCAGATGTATGGCTGTCGTGCACTTGAGGTTATCGATCTTGAACAGAAAGCTCAGCTTGTTAATGAGCTAGATGGAAATGTTATGAGATGTGTCCGTGACCAAAATGGGAATCATGTAATACAGAAGTGCATTGAATCTATTCCAACTAAAAACATTGACTTCATAATATCTGCATTTCGTGGTCAAGTTGCTATTCTATCTATGCATCCTTATGGTTGCCGAGTCATGCAGAGAGTTCTAGAGCATTGTTCAGACGAGGTTCAATGTCAGTTTATTGTTGATGAAATTTTGGAGTCAGTTTTTACTCTTGCACAGGACCAGTATGGTAATTATGTTACTCAGCATGTGTTGGAGAGAGGAAAGCCTCCAGAAAGGAGCCAAATTATTAGCAAGCTGTCAGGACATATCGTCCAATTAAGCCAGCATAAATTTGCATCAAATGTTGTGGAAAAATGTTTGGAGTATGGTGGTGCCACTGAAAGGCAGTTGTTAATTGCAGAGATTGTAGGACATGACAAACAAAATGATAATTTATTGATAATGATGAAAGACCAATTTGCAAATTATGTGATCCAGAAGGTTCTTGAGATCTGTTCTGAAAATCAGCGAGCATCATTACTTTCTCGCATAAGACAACATGCTCATGCTTTGAAGAAATACACTTATGGAAAGCACATTGTGGCTCGGTTTGAACAAATACTTGGAGAAGGAGACAGATGA 2730 0.4158 MATESPIRISEAGGKWPSLKEAATFGSPSRHMATEDLGIFLNGHRFHGSGKDAVPNRSGSAPPSMEGSFLAIENLLSQNTTRNASSGSLNRAMQKYDSGKGSFHLSRGTLATHKEESEDDSTQQLYDNELNKASGKWHRQDVASTSFQHKNLVLEDLPQNMSPVYNKSLGVVDELIDVDTGSSSSHYPPVTTVDAVKPTNGADDIRLSSTVDSPAPVTSSSSLNSTGSMGFNDLDVTIVESQLRALNVSNLPNSESQSYEDKWKNSYQNNLMQMQHQQQNYQFEVPSTNSQSEKYAYVGMEQFLHNPSKFSSDVQPVLQSSGYTPPLYATAAAYMTSTNPFYSNLQASGIYSPQYVGAYPFSPTAVPPYIAAYPHGSVPLVDGATGSSFTPQAPGVSSTAGNISHGAEMMHANKFFGQFGFPLQPSFGDPIYMQYHQQPFVEGYGVSGHLLAPRASVGGQIGPFDSQKRPTSGAYLDDKKLHNQRSGANSNRDGLIHPGYFGHPSNMGFVTQYPSSPLSRPVLSGYPESSPGLLGGRNEMKLSPASGRNGGLLSGWQGQSAFDSGAHDPKIAIFLEELKSGKGRRFELSDIIGHIVDFRQHGSRFIQQKLESCGVEEKELVFKEVLPHTSKLMTDVFGNYVIQKFFEYGSPEQRKDLANRLLGQILPLSLQMYGCRALEVIDLEQKAQLVNELDGNVMRCVRDQNGNHVIQKCIESIPTKNIDFIISAFRGQVAILSMHPYGCRVMQRVLEHCSDEVQCQFIVDEILESVFTLAQDQYGNYVTQHVLERGKPPERSQIISKLSGHIVQLSQHKFASNVVEKCLEYGGATERQLLIAEIVGHDKQNDNLLIMMKDQFANYVIQKVLEICSENQRASLLSRIRQHAHALKKYTYGKHIVARFEQILGEGDR 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g2041 909 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 52 903 - -
Aed6g2041 909 Gene3D - 572 905 IPR011989 -
Aed6g2041 909 SMART pum_5 660 691 IPR001313 GO:0003723
Aed6g2041 909 SMART pum_5 590 623 IPR001313 GO:0003723
Aed6g2041 909 SMART pum_5 728 764 IPR001313 GO:0003723
Aed6g2041 909 SMART pum_5 843 878 IPR001313 GO:0003723
Aed6g2041 909 SMART pum_5 692 727 IPR001313 GO:0003723
Aed6g2041 909 SMART pum_5 801 836 IPR001313 GO:0003723
Aed6g2041 909 SMART pum_5 765 800 IPR001313 GO:0003723
Aed6g2041 909 SMART pum_5 624 659 IPR001313 GO:0003723
Aed6g2041 909 ProSiteProfiles Pumilio RNA-binding repeat profile. 801 836 IPR001313 GO:0003723
Aed6g2041 909 ProSiteProfiles Pumilio RNA-binding repeat profile. 728 764 IPR001313 GO:0003723
Aed6g2041 909 CDD Pumilio 585 899 IPR033712 GO:0003723
Aed6g2041 909 ProSiteProfiles Pumilio RNA-binding repeat profile. 765 800 IPR001313 GO:0003723
Aed6g2041 909 ProSiteProfiles Pumilio RNA-binding repeat profile. 624 659 IPR001313 GO:0003723
Aed6g2041 909 PANTHER PUMILIO HOMOLOG 6, CHLOROPLASTIC 52 903 - -
Aed6g2041 909 MobiDBLite consensus disorder prediction 472 486 - -
Aed6g2041 909 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 556 904 IPR033133 GO:0003723
Aed6g2041 909 SUPERFAMILY ARM repeat 585 900 IPR016024 -
Aed6g2041 909 ProSiteProfiles Pumilio RNA-binding repeat profile. 692 727 IPR001313 GO:0003723
Aed6g2041 909 MobiDBLite consensus disorder prediction 461 493 - -
Aed6g2041 909 Pfam Pumilio-family RNA binding repeat 849 880 IPR001313 GO:0003723
Aed6g2041 909 Pfam Pumilio-family RNA binding repeat 600 626 IPR001313 GO:0003723
Aed6g2041 909 Pfam Pumilio-family RNA binding repeat 770 802 IPR001313 GO:0003723
Aed6g2041 909 Pfam Pumilio-family RNA binding repeat 631 659 IPR001313 GO:0003723
Aed6g2041 909 Pfam Pumilio-family RNA binding repeat 805 838 IPR001313 GO:0003723
Aed6g2041 909 Pfam Pumilio-family RNA binding repeat 703 727 IPR001313 GO:0003723
Aed6g2041 909 Pfam Pumilio-family RNA binding repeat 664 679 IPR001313 GO:0003723
Aed6g2041 909 Pfam Pumilio-family RNA binding repeat 732 767 IPR001313 GO:0003723
Aed6g2041 909 ProSiteProfiles Pumilio RNA-binding repeat profile. 837 878 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g2041 Aed-Chr6 23168484 23175198 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g2041 K17943 - gmx:100819166 1509.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2041 6 23168484 23175198 Aed4g0833 4 7233744 7245645 PCT