Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0833 ATGGCAACTGAGAGTCCAATTAGAATCTCAGAAGCTGGGGGTAAATGGCCTTCACATAAGGAAGCTGCAGCTTTTGGTTCACCGTCTCGTAACATGGCAACAGAGGATTTGGGTATACTTCTGAAGGGCCATAGGTTCCATGGTAGTGGAAAGGATGTGGCACCAAATCGCAGCGGCAGTGCACCGCCCAGCATGGAAGGCTCATTTCTGGCCATAGAAAACCTCTTACCCCAGCAGAACACCGCCCAGAGTGCAAGTTTTGCAACTCTTAGCAGAGCCATGCAAAACTGTGAGTCTGAAGAGCAATTGCGAGCTGATCCAGCCTATTTGGCATATTACAGTTCCAATGTCAACCTAAACCCTAGACTTCCTCCCCCGCTTACGTCCTGGGAAAATCGCCATCTAGGACGTCATATTGGCAATTTTAGAAATAATAATTGGAGAATGTCTACCGCAGATAATAGCGGTAAAAGTACTTCACATTTGCCTCAAAGAACCCTGTCCACACACAAGGAGGAATCTGAAGATGATTCACCCCAACAGCCATATGATGACAAATTAGTCAACGCAAGTGGAATGTGGCATAAACCTGATGCAGCTTCATTGGCATCTCAGCACAAAAATATGGTTGATTTAATTCAGGAAGATTTTCCTCGCACCATGTCACCTGTATATAATAAGTCTCTTTCTGTAAGTCATGGACTAGTGGATAAACCAATTGACTTAGAAGCCGGTTCTAGTTCTTCTCATGATCTCCCTCTTACTACCGTAGAGGCTGCTAAATCTACTATAGGTGCAGGTCATATAAGGGTGTCATCAAGTGTTGATACCCATGCCCCAGTTGGAAGCTCATCATCTCTTGAATCCACTGGCAGCATTGGTGTTAGTGACTTTGATGTTGCAACTGTTGAATCTCAACTAAAGGCTCTTAGTGTACCTAATCTACCAAATTCAGAAAGTCTGAGTTACGAAGAAAAATGGAAGGCTGGCTACCAGAATAATTTGATGCAACGCCAGGGATTCCAGCAAATGTATGATGTTCCTAGTGCCAATTCTCAAAATGTAAATTCCATGTATGTTGGTAGGGAACAAATTCCATTTAATTCCAGCAAGTTCTCCAATGTCCAGCCACTACTGCAGTCATCTGGGTTTACACCTCCCCTATATGCCACAGCAGCTGCTTATATGTCCTCAGCCAATCCATTTTACACTAATATGCATGCCTCAAGTATATATACTCCACAATATGTTGGTGGATACACTGTAAATCCCGCAGCTTTTCCTCCATATGTTACTGCATTCCCTCCTCATGGTGCTGTCCCTCTTGTTGCTGATGGAGCTACTAGTTCCAGTTATACTCCACTAACACCAGGGGTTTCAACTGGAGGAAATATTTCGCATGGAGCTGAAATGGTACAGGCAAACAAGTACCTTGGGCAATTTGGATTTCCCCTGCAGTCTTCTTTTGGTGATCCAATGTACATGCAATATCATCAGCAACCTTTTGTGGAGGGGTATGGTATTTCGGGTCATTTTGATCCATTGCCACCTAGAGCAAGTGGTGTTAGCCAAATTAGTCCTTATGATTCACAAAAAAGGCCCAATACCAGTGCTTATTTGGATGATAAAAAATTATCTGATCAGAGAACTGCTGCTAATATGAACTCCAGAAGAGGTGGATTATTGATTCCTAATTATTTAGAACACATTCCAAACATGGGTTTTGTAATGCAGTATCAGAGCTCACCACTTCCTAGTCCAGTTTTATCAGGAGGATACCCAGAAGGAAGTCCTGGCCTTCCAGGAGTTAGGAATGAAATAAAACATAACCCAGCTTCTGGAAGAAATGGAGGCATAATATCTGGATGGCAAGGTCAGAGATCTTTTGACAGTGCTCATGACCCCAAAATTGTTAATTTTCTTGAAGACTTAAAATCTGGCAAAGGTCGAAGATTTGAGCTATCTGATATTATTGGACATATTGTTGAATTTAGGCAACATGGAAGTCGATTCATACAGCAGAAATTGGAAAGTTGTAGTGTTGAAGAGAAGGCATTGGTGTTTAAAGAGGTTCTTCCACATGCTTCTAAATTAATGACTGATGTATTTGGTAACTATGTAATACAGAAGTTTTTTGAGTATGGAAGTCCTGAGCAGAGGAAGGAACTAGCAGATCAACTTGTTGGCCAAATACTGCCTTTAAGTCTGCAGATGTATGGCTGTCGTGTAATCCAAAAGGCACTTGAGGTTATTGAGCTTGAACAGAAAGCTCGGCTTGTTCATGAGCTAGATGGACATGTTATGAGATGTGTTCGTGATCAAAATGGTAATCATGTAATTCAAAAGTGCATTGAATCTATTCCAACCAAAAAGATTAGCTTTATACTATCTGCATTTCGTGGTCAAGTTGCTACTCTATCAATGCATCCCTATGGATGCCGAGTCATACAGAGAGTTCTAGAACATTGCACAGACGAGAGCCAATGTCAGTTTATTGTGGATGAAATCTTGGAGTCAGTTTGTGCTCTTGCTCAAGACCAGTATGGTAATTATGTTACACAGCATGTCTTGGAGAGAGGAAAGCCTCAGGAAAGGAGCCAAATTATCAACAAATTGTCAGGACATATTGTTCAATTAAGCCAGCATAAGTTTGCTTCAAATGTTGTAGAAAAATGTTTGGAGTATGGTGATGCCACTGAACGGGAGTTGTTAGTTGCAGAGATATTTGGGCATGATGAACAATGTGATAATTTATTGACAATGATGAAAGATCAATTTGCGAATTATGTGGTCCAGAAGGTCATTGATATCTGTTCTGAAAATCAGCGAGCAATGTTGCTTTCTCACGTAAGAATTCATGCTCATGCTTTGAAGAAATACACATATGGAAAACACATTGTGGCTCGGTTGGAACATCAATTTGGAGGTAGGGTATTCCATATTCATGCTAAAATATTCTTGTTTTTATTTGTTAAATTAAATCATGGACCATGGTCTCGTCTTCTGATGAGAATCAAGCACCGGGCTCATGATGAGAATATAGGAACGAAGCCATGGGTCATGAGCAATGCTGCTGCGGCATGCAAACACTGCAGCATCAATGTATGTTCTGTTGATCACAGGAAATAA 3129 0.4132 MATESPIRISEAGGKWPSHKEAAAFGSPSRNMATEDLGILLKGHRFHGSGKDVAPNRSGSAPPSMEGSFLAIENLLPQQNTAQSASFATLSRAMQNCESEEQLRADPAYLAYYSSNVNLNPRLPPPLTSWENRHLGRHIGNFRNNNWRMSTADNSGKSTSHLPQRTLSTHKEESEDDSPQQPYDDKLVNASGMWHKPDAASLASQHKNMVDLIQEDFPRTMSPVYNKSLSVSHGLVDKPIDLEAGSSSSHDLPLTTVEAAKSTIGAGHIRVSSSVDTHAPVGSSSSLESTGSIGVSDFDVATVESQLKALSVPNLPNSESLSYEEKWKAGYQNNLMQRQGFQQMYDVPSANSQNVNSMYVGREQIPFNSSKFSNVQPLLQSSGFTPPLYATAAAYMSSANPFYTNMHASSIYTPQYVGGYTVNPAAFPPYVTAFPPHGAVPLVADGATSSSYTPLTPGVSTGGNISHGAEMVQANKYLGQFGFPLQSSFGDPMYMQYHQQPFVEGYGISGHFDPLPPRASGVSQISPYDSQKRPNTSAYLDDKKLSDQRTAANMNSRRGGLLIPNYLEHIPNMGFVMQYQSSPLPSPVLSGGYPEGSPGLPGVRNEIKHNPASGRNGGIISGWQGQRSFDSAHDPKIVNFLEDLKSGKGRRFELSDIIGHIVEFRQHGSRFIQQKLESCSVEEKALVFKEVLPHASKLMTDVFGNYVIQKFFEYGSPEQRKELADQLVGQILPLSLQMYGCRVIQKALEVIELEQKARLVHELDGHVMRCVRDQNGNHVIQKCIESIPTKKISFILSAFRGQVATLSMHPYGCRVIQRVLEHCTDESQCQFIVDEILESVCALAQDQYGNYVTQHVLERGKPQERSQIINKLSGHIVQLSQHKFASNVVEKCLEYGDATERELLVAEIFGHDEQCDNLLTMMKDQFANYVVQKVIDICSENQRAMLLSHVRIHAHALKKYTYGKHIVARLEHQFGGRVFHIHAKIFLFLFVKLNHGPWSRLLMRIKHRAHDENIGTKPWVMSNAAAACKHCSINVCSVDHRK 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0833 1042 ProSiteProfiles Pumilio RNA-binding repeat profile. 907 948 IPR001313 GO:0003723
Aed4g0833 1042 MobiDBLite consensus disorder prediction 518 539 - -
Aed4g0833 1042 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 45 976 - -
Aed4g0833 1042 MobiDBLite consensus disorder prediction 141 188 - -
Aed4g0833 1042 ProSiteProfiles Pumilio RNA-binding repeat profile. 835 870 IPR001313 GO:0003723
Aed4g0833 1042 SMART pum_5 726 761 IPR001313 GO:0003723
Aed4g0833 1042 SMART pum_5 656 689 IPR001313 GO:0003723
Aed4g0833 1042 SMART pum_5 762 797 IPR001313 GO:0003723
Aed4g0833 1042 SMART pum_5 835 870 IPR001313 GO:0003723
Aed4g0833 1042 SMART pum_5 798 834 IPR001313 GO:0003723
Aed4g0833 1042 SMART pum_5 913 948 IPR001313 GO:0003723
Aed4g0833 1042 SMART pum_5 690 725 IPR001313 GO:0003723
Aed4g0833 1042 SMART pum_5 871 906 IPR001313 GO:0003723
Aed4g0833 1042 ProSiteProfiles Pumilio RNA-binding repeat profile. 690 725 IPR001313 GO:0003723
Aed4g0833 1042 SUPERFAMILY ARM repeat 640 971 IPR016024 -
Aed4g0833 1042 ProSiteProfiles Pumilio RNA-binding repeat profile. 726 761 IPR001313 GO:0003723
Aed4g0833 1042 MobiDBLite consensus disorder prediction 166 182 - -
Aed4g0833 1042 Gene3D - 637 975 IPR011989 -
Aed4g0833 1042 PANTHER PUMILIO HOMOLOG 5 45 976 - -
Aed4g0833 1042 ProSiteProfiles Pumilio RNA-binding repeat profile. 762 797 IPR001313 GO:0003723
Aed4g0833 1042 Pfam Pumilio-family RNA binding repeat 875 908 IPR001313 GO:0003723
Aed4g0833 1042 Pfam Pumilio-family RNA binding repeat 666 692 IPR001313 GO:0003723
Aed4g0833 1042 Pfam Pumilio-family RNA binding repeat 772 796 IPR001313 GO:0003723
Aed4g0833 1042 Pfam Pumilio-family RNA binding repeat 917 949 IPR001313 GO:0003723
Aed4g0833 1042 Pfam Pumilio-family RNA binding repeat 840 872 IPR001313 GO:0003723
Aed4g0833 1042 Pfam Pumilio-family RNA binding repeat 802 837 IPR001313 GO:0003723
Aed4g0833 1042 Pfam Pumilio-family RNA binding repeat 730 763 IPR001313 GO:0003723
Aed4g0833 1042 Pfam Pumilio-family RNA binding repeat 695 727 IPR001313 GO:0003723
Aed4g0833 1042 ProSiteProfiles Pumilio RNA-binding repeat profile. 798 834 IPR001313 GO:0003723
Aed4g0833 1042 MobiDBLite consensus disorder prediction 143 165 - -
Aed4g0833 1042 CDD Pumilio 651 970 IPR033712 GO:0003723
Aed4g0833 1042 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 636 974 IPR033133 GO:0003723
Aed4g0833 1042 MobiDBLite consensus disorder prediction 1 29 - -
Aed4g0833 1042 ProSiteProfiles Pumilio RNA-binding repeat profile. 871 906 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0833 Aed-Chr4 7233744 7245645 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0833 K17943 - gmx:100811036 1750.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2041 6 23168484 23175198 Aed4g0833 4 7233744 7245645 PCT