Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1682 ATGAACCACAACCACCGACGCGTTTTCCGTTCCCACATCTCCTTGCATTTATCGTTCCCTTCTTTGCATTGCAAATTCCCTGTATTCGTTTTTGCAGATACCATAATTAGCATGTCATCAAATAATAAGCATAAAGTTGAGGAAGTGAATGAGTTAAGGGAGATATTTGGTCGATTTGACATGGACTCAGATGGGAGCCTAACGATGCTGGAGCTAGCAGCGCTTCTTCGGTCTCTGGGGCTGAAGCCGTCGGGTGAGCAGGTCCAAGCCCTGTTAGCCAACATGGACTCAAACGCCAATGGCAAAGTCGAGTTTCACGAGTTGGTCACGGCATTAATACTACCTGACGACGACAACATTAACGCACAGGTTTTGATGAACCAAGAACAGCTCCTAGGACTGTTCAAGTGCTTCGATCGCGACGGAAACGGTTACATTTCCGCCGCCGAGTTGGCCAAGGCAATGGCCAAAATGGGTCAGCCACTCACGTACCGTGAGCTCACGGAGATGATCAAAGAGGCTGACACGGATGGGGATGGCGTTATTAGCTTCAACGAGTTTGCCACTATCATGGCTCGCTCTGCTTCTCATTTCTTAGGCCTCTCGTTGTAG 612 0.4886 MNHNHRRVFRSHISLHLSFPSLHCKFPVFVFADTIISMSSNNKHKVEEVNELREIFGRFDMDSDGSLTMLELAALLRSLGLKPSGEQVQALLANMDSNANGKVEFHELVTALILPDDDNINAQVLMNQEQLLGLFKCFDRDGNGYISAAELAKAMAKMGQPLTYRELTEMIKEADTDGDGVISFNEFATIMARSASHFLGLSL 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1682 203 Pfam EF-hand domain pair 51 111 IPR002048 GO:0005509
Aed6g1682 203 Pfam EF-hand domain pair 129 191 IPR002048 GO:0005509
Aed6g1682 203 PANTHER CALCIUM BINDING PROTEIN 44 202 - -
Aed6g1682 203 ProSitePatterns EF-hand calcium-binding domain. 96 108 IPR018247 -
Aed6g1682 203 CDD EFh 135 192 IPR002048 GO:0005509
Aed6g1682 203 Gene3D - 34 123 - -
Aed6g1682 203 ProSitePatterns EF-hand calcium-binding domain. 139 151 IPR018247 -
Aed6g1682 203 Gene3D - 124 199 - -
Aed6g1682 203 SUPERFAMILY EF-hand 45 193 IPR011992 -
Aed6g1682 203 ProSitePatterns EF-hand calcium-binding domain. 60 72 IPR018247 -
Aed6g1682 203 SMART efh_1 130 158 IPR002048 GO:0005509
Aed6g1682 203 SMART efh_1 51 79 IPR002048 GO:0005509
Aed6g1682 203 SMART efh_1 166 194 IPR002048 GO:0005509
Aed6g1682 203 SMART efh_1 87 115 IPR002048 GO:0005509
Aed6g1682 203 ProSiteProfiles EF-hand calcium-binding domain profile. 162 197 IPR002048 GO:0005509
Aed6g1682 203 ProSiteProfiles EF-hand calcium-binding domain profile. 83 118 IPR002048 GO:0005509
Aed6g1682 203 ProSitePatterns EF-hand calcium-binding domain. 175 187 IPR018247 -
Aed6g1682 203 CDD EFh 51 112 IPR002048 GO:0005509
Aed6g1682 203 ProSiteProfiles EF-hand calcium-binding domain profile. 126 161 IPR002048 GO:0005509
Aed6g1682 203 PANTHER CALCIUM-BINDING PROTEIN CML15-RELATED 44 202 - -
Aed6g1682 203 ProSiteProfiles EF-hand calcium-binding domain profile. 47 82 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1682 Aed-Chr6 20544989 20545600 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1682 47 203 EF-hand Containing Proteins AT1G18530 71.338 1.60e-76 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1682 K13448 - gmx:100795885 254.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1176 10 11209701 11210123 Aed6g1682 6 20544989 20545600 ECH
Aed6g1682 6 20544989 20545600 Aed6g1682 6 20544989 20545600 ECH