Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1176 ATGGATTCGAACAGGAGCCTAACAATGCTGGAGCTCATCACGCTCTTAAGGTCGTTAGGACTAAACCTGTCAAAAGACCAAATTGACGCCATGTTAGCCAACACTGACTCAAACGACAACAGCTTCGTTGAGTTTGATGAATTGGTGGATACAATATTGCAATACATAAGCGCAAAGATATTGTTGAATCAAGAAATGTTGTTTCAAGTGTTCAAATGTTTCAACCACGACAGAAATGGTTTCATAATCGCAGCAAAGTTGGCTGAGATAATGGCAAAATTGGGCCAGTCCCTCGCATATAGAGTGCTCACAGAGATGATCATAGAGGCTGACACCGATGGTGATGGTGTCATCAGCTTCAACGATTTCGCCACCGTCATGGGTGCGTCAACCTTTGCCTTCCTAGGCTTTGCATTATCATGA 423 0.435 MDSNRSLTMLELITLLRSLGLNLSKDQIDAMLANTDSNDNSFVEFDELVDTILQYISAKILLNQEMLFQVFKCFNHDRNGFIIAAKLAEIMAKLGQSLAYRVLTEMIIEADTDGDGVISFNDFATVMGASTFAFLGFALS 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1176 140 CDD EFh 66 127 IPR002048 GO:0005509
Aed10g1176 140 ProSiteProfiles EF-hand calcium-binding domain profile. 62 97 IPR002048 GO:0005509
Aed10g1176 140 Gene3D - 57 133 - -
Aed10g1176 140 PANTHER CALCIUM-BINDING PROTEIN CML15-RELATED 1 138 - -
Aed10g1176 140 SUPERFAMILY EF-hand 2 127 IPR011992 -
Aed10g1176 140 Gene3D - 1 56 - -
Aed10g1176 140 Pfam EF-hand domain pair 5 49 IPR002048 GO:0005509
Aed10g1176 140 Pfam EF-hand domain pair 65 127 IPR002048 GO:0005509
Aed10g1176 140 ProSitePatterns EF-hand calcium-binding domain. 111 123 IPR018247 -
Aed10g1176 140 ProSiteProfiles EF-hand calcium-binding domain profile. 98 133 IPR002048 GO:0005509
Aed10g1176 140 PANTHER CALCIUM BINDING PROTEIN 1 138 - -
Aed10g1176 140 SMART efh_1 27 55 IPR002048 GO:0005509
Aed10g1176 140 SMART efh_1 102 130 IPR002048 GO:0005509
Aed10g1176 140 SMART efh_1 66 94 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1176 Aed-Chr10 11209701 11210123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1176 1 140 EF-hand Containing Proteins AT1G18530 57.143 1.59e-51 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1176 K13448 - gmx:100813924 187.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1176 10 11209701 11210123 Aed6g1682 6 20544989 20545600 ECH
Aed10g1176 10 11209701 11210123 Aed10g1176 10 11209701 11210123 ECH