Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1590 ATGAAAGGTTTGGTTCCTGCAAGCAGCAAAAGAGTTGTTCAAGAGCACTTGCTGTCCCTATTATTGCAGAACTGCAACAGCGTAAGCACCCTCCTTCAAATTCACACCCAAGTACTTCTCAACGGCTTTTCACACAAGAACATCATCGTTGCCAAGCTTCTCTCTTTATACATAGCCTCTGGCCATCTCCAACATGCCCACCACCTTTTCGCCAAAATCGACAACCCAACAACCACCGTCTGGAACCACCTCATCAGAGGCTACTCCCGCAGCCACACGCCTTGGAAAGCCGTCGAATTTTACAGCCACATGGTGTCTTCCGAGGCTGAGCCTGATGGGTTCACCTACTCGTCTCTGTTGAGCGCGTGTGCGCGTGGTGGTGGGTTGGTAAAAGAAGGGGTACAGGTGCATGCCGCGGTTTTGGTAAAAGGGTATTGCTCTAATGTCTTTGTGGACACCAGTTTGATCAGTTTTTATGCTGGGAGTGGTGGTGTTGAGCGAGCGCGCCATGTGTTTGATGATATGCCGCAGAGAAGTGTTGTTACCTGGAACTCTATACTTGCTGGGTATGTCAGGTGTGCCGATTTTGATAGGGCTAGGAGGGTTTTTGACGCCATGCCGTGTAGGAATGTTGTGTCTTGGACCACCATGGTTGCCGGGTGTGCTCGGAATGGGAAGAGTAGACAGGCTTTGTTGTTGTTTGGGGAGATGAGGAGAACACGTGTGGAATTGGATCAGGTGGCATTGGTGGCGGCTTTGTCGGCGTGTGCTGAATTAGGGGATTTGAAGTTGGGAAGATGGATTCATTGGTATGTTCAGCAGTGGCTTGTTGCGAGGAACCGGCAGCAACCCTCTGTGCGCTTGAACAATGCACTCATACACATGTATGCCAGTTGTGGAATCCTTCATGAAGCTTATCAAGTGTTTGTCAAAATGTCTCGGAAAAGCACCGTGTCTTGGACTAGCATGATCATGGCTTTTGCGAAACAGGGACTTGGGAAGGAGGCCCTTGATCTATTTAAGACTATGCTTAGTGATGGTGTGGGAGTAAATGAAGTAAGGCCTGATGGAATAACCTTCATTGGAGTTCTTTGTGCCTGTAGCCATGCCGGGTTTGTGGACGAAGGACGCCAAATTTTTGCATCCATGAAGCATACTTGGGGAATCAGCCCAAGGATTGAACACTACGGATGCATGGTTGATCTCTTGAGTCGTGCTGGGTTCTTAGATGAAGCACGTGGACTTATTGAAACTATGCCCTTAAAGCCTAATGATGCGCTATGGGGTGCCCTTCTCGGTGGTTGTCGCATTCACAAGAACTCAGAGCTAGCATCACAAGTGGAAAACAAGTTAGTACCTGAGCTCAACGCTGATCAAGCTGCGGGCTATCTTGTGCTCTTGTCAAACATATATGCTTTTGGTCAAAGGTGGCAGGATGTCATTATAGTGAGACAGAAAATGATTGAGATGGGTGTGAAAAAGCCTCCAGGCAGAAGTTGGATACAAATTAACGGAGTTGTCCATAATTTTGTGGCAGGTGACATGACTCATAAGCATTCATCTTTTATCTATGAAATCCTGTGTGACGTCACCAAGCAAGCCAATTTGGTAGGCTATGAACCAGAGATAAATGTTTTCTTGGATGTTGAGTTGTAG 1656 0.4752 MKGLVPASSKRVVQEHLLSLLLQNCNSVSTLLQIHTQVLLNGFSHKNIIVAKLLSLYIASGHLQHAHHLFAKIDNPTTTVWNHLIRGYSRSHTPWKAVEFYSHMVSSEAEPDGFTYSSLLSACARGGGLVKEGVQVHAAVLVKGYCSNVFVDTSLISFYAGSGGVERARHVFDDMPQRSVVTWNSILAGYVRCADFDRARRVFDAMPCRNVVSWTTMVAGCARNGKSRQALLLFGEMRRTRVELDQVALVAALSACAELGDLKLGRWIHWYVQQWLVARNRQQPSVRLNNALIHMYASCGILHEAYQVFVKMSRKSTVSWTSMIMAFAKQGLGKEALDLFKTMLSDGVGVNEVRPDGITFIGVLCACSHAGFVDEGRQIFASMKHTWGISPRIEHYGCMVDLLSRAGFLDEARGLIETMPLKPNDALWGALLGGCRIHKNSELASQVENKLVPELNADQAAGYLVLLSNIYAFGQRWQDVIIVRQKMIEMGVKKPPGRSWIQINGVVHNFVAGDMTHKHSSFIYEILCDVTKQANLVGYEPEINVFLDVEL 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1590 551 Pfam E motif 438 502 IPR046848 -
Aed6g1590 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Aed6g1590 551 PANTHER OS09G0411600 PROTEIN 8 529 - -
Aed6g1590 551 Gene3D Tetratricopeptide repeat domain 268 351 IPR011990 GO:0005515
Aed6g1590 551 Gene3D Tetratricopeptide repeat domain 352 532 IPR011990 GO:0005515
Aed6g1590 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Aed6g1590 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 77 111 IPR002885 -
Aed6g1590 551 Pfam PPR repeat 359 384 IPR002885 -
Aed6g1590 551 Pfam PPR repeat 395 419 IPR002885 -
Aed6g1590 551 Pfam PPR repeat 290 315 IPR002885 -
Aed6g1590 551 Pfam PPR repeat 318 348 IPR002885 -
Aed6g1590 551 Pfam PPR repeat 153 179 IPR002885 -
Aed6g1590 551 Pfam PPR repeat family 209 255 IPR002885 -
Aed6g1590 551 Pfam PPR repeat family 76 125 IPR002885 -
Aed6g1590 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 209 IPR002885 -
Aed6g1590 551 TIGRFAM PPR: pentatricopeptide repeat domain 318 351 IPR002885 -
Aed6g1590 551 TIGRFAM PPR: pentatricopeptide repeat domain 181 211 IPR002885 -
Aed6g1590 551 TIGRFAM PPR: pentatricopeptide repeat domain 212 245 IPR002885 -
Aed6g1590 551 Gene3D Tetratricopeptide repeat domain 6 155 IPR011990 GO:0005515
Aed6g1590 551 Gene3D Tetratricopeptide repeat domain 156 265 IPR011990 GO:0005515
Aed6g1590 551 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 8 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1590 Aed-Chr6 19894974 19896629 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1590 18 547 Glycoside Hydrolase AT3G49170 31.481 1.06e-80 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1590 - - gmx:100813379 882.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0373 3 2640511 2642001 Aed6g1590 6 19894974 19896629 ECH
Aed6g1590 6 19894974 19896629 Aed6g1590 6 19894974 19896629 ECH