Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g0373 ATGATCGTTAATGGTTTCGCTTTCAACTTTGGTTTCCTCCGAAAACTCTTCCTCACCGCCGCCATGTCAATGGTAGGTCCCGCCGCCACAACTGCCGTGACACAATATGCACTCCAAATGTTCGATCACATTCCCCAACCAGACACCTTCGTGTGGAACACCTACATCAGAGGCTCTTCTCAGAGTCTCTATCCGGTGCGCGCGGTTGCACTGTATGCCCAGATGGACCAGCGTTCTGTGAAGCCTGATAACTTCACTTTCCCCTTTGTTCTCAAGGCTTGCACCAAGCTCTTCTGGATCAACACTGGTTCCGTGGTTCATGGCCGGATTTTGAGGCTTGGGTTTGGTTCAAATGTGGTTGTGAGGAACACTCTTTTGGTTTTTCATGCTAAATGTGGAGACTTGAAGATTGCAACTGATATTTTTTATGATTCGGATAAGGGGGATGTGGTTGCTTGGTCCGCACTCATTGCTGGGTATGCCCAAAGAGGAGATTTGAGTGCTGCGCGGAAACTGTTTGATGAAATGCCGAATAGAGATCTGGTGTCGTGGAATGTGATGATCACAGCATACACGAAGCATGGAGACATGGAGTGTGCTAGGAGGCTTTTTGATGAGGCTCCTGTGAGGGATGTTGTTAGTTGGAACACGATGATTGGTGGTTGTGTGCTTCGTGGCTTGAACCAGGAGGCATTGGAGTTGTTTGACCAGATGTGTGGAGTTGGGGATTGTCCTGATGAGGTGACAATGTTGAGTTTGTTATCTGCTTGTGCTGATTTGGGTGATTTGGAGAGTGGTGAGAAGGTGCATGCTAAGATCATGGAGATGAGCAAGGGAAAGTTGAGCACGCTATTGGGGAATGCTCTTGTTGATATGTATGCCAAGTGTGGAAATATTGGGAAAGCACTTCATGTGTTTTGGTTGATAAGTGATAAAGATGTGTTCTCATGGAACTCGGTCATTGGTGGGTTGGCCTTCCATGGCCATGCTGAAGAGTCACTTGGTCTGTTCAGAGAAATGCAGAGGACCAAGGTTTGTCCAGATGAGGTTACCTTTGTTGGTGTTTTAGCAGCTTGTAGTCATGCTGGAAATGTTGACGAGGGTAATCGGTATTTTCATCTTATGAGAAGTAAGTACAAGATTGAGCCAAACATTAGGCATTGTGGGTGTGTGGTGGACATGCTAGGGCGTGCTGGACTTTTGAAGGAAGCGTTTGATTTCATAGCCTCCATGAAGATTGAACCTAATGCAATTGTTTGGAGGAGTCTGCTTGGAGCTTGCAAAGTCCATGGAGATGTGAAGTTGGCAAAACAAGCAAATGAGCAGTTGCTTAGAATGAGAGGGGACCAAAGTGGGGACTATGTATTGCTGTCAAATGTATATGCATCACAAGGTGAATGGGATGGGGCTGAGAAGGTAAGGAAGTTGATGGATGACGATGGTGTGACCAAAAATCGTGGCTCTAGCTTTGTTGAGGCACGCAGCAGATGA 1491 0.4668 MIVNGFAFNFGFLRKLFLTAAMSMVGPAATTAVTQYALQMFDHIPQPDTFVWNTYIRGSSQSLYPVRAVALYAQMDQRSVKPDNFTFPFVLKACTKLFWINTGSVVHGRILRLGFGSNVVVRNTLLVFHAKCGDLKIATDIFYDSDKGDVVAWSALIAGYAQRGDLSAARKLFDEMPNRDLVSWNVMITAYTKHGDMECARRLFDEAPVRDVVSWNTMIGGCVLRGLNQEALELFDQMCGVGDCPDEVTMLSLLSACADLGDLESGEKVHAKIMEMSKGKLSTLLGNALVDMYAKCGNIGKALHVFWLISDKDVFSWNSVIGGLAFHGHAEESLGLFREMQRTKVCPDEVTFVGVLAACSHAGNVDEGNRYFHLMRSKYKIEPNIRHCGCVVDMLGRAGLLKEAFDFIASMKIEPNAIVWRSLLGACKVHGDVKLAKQANEQLLRMRGDQSGDYVLLSNVYASQGEWDGAEKVRKLMDDDGVTKNRGSSFVEARSR 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g0373 496 Pfam PPR repeat 390 412 IPR002885 -
Aed3g0373 496 Pfam PPR repeat 182 206 IPR002885 -
Aed3g0373 496 Pfam PPR repeat 151 179 IPR002885 -
Aed3g0373 496 Pfam PPR repeat 287 308 IPR002885 -
Aed3g0373 496 TIGRFAM PPR: pentatricopeptide repeat domain 151 181 IPR002885 -
Aed3g0373 496 TIGRFAM PPR: pentatricopeptide repeat domain 315 349 IPR002885 -
Aed3g0373 496 TIGRFAM PPR: pentatricopeptide repeat domain 213 241 IPR002885 -
Aed3g0373 496 TIGRFAM PPR: pentatricopeptide repeat domain 182 210 IPR002885 -
Aed3g0373 496 TIGRFAM PPR: pentatricopeptide repeat domain 350 384 IPR002885 -
Aed3g0373 496 Gene3D Tetratricopeptide repeat domain 180 282 IPR011990 GO:0005515
Aed3g0373 496 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 20 154 - -
Aed3g0373 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Aed3g0373 496 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 110 494 - -
Aed3g0373 496 Pfam E motif 430 492 IPR046848 -
Aed3g0373 496 Pfam PPR repeat family 312 359 IPR002885 -
Aed3g0373 496 Pfam PPR repeat family 47 95 IPR002885 -
Aed3g0373 496 Pfam PPR repeat family 210 258 IPR002885 -
Aed3g0373 496 PANTHER OS01G0913400 PROTEIN-RELATED 110 494 - -
Aed3g0373 496 Gene3D Tetratricopeptide repeat domain 60 179 IPR011990 GO:0005515
Aed3g0373 496 Gene3D Tetratricopeptide repeat domain 283 494 IPR011990 GO:0005515
Aed3g0373 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 48 82 IPR002885 -
Aed3g0373 496 PANTHER OS01G0913400 PROTEIN-RELATED 20 154 - -
Aed3g0373 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 313 347 IPR002885 -
Aed3g0373 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g0373 Aed-Chr3 2640511 2642001 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g0373 35 492 Glycoside Hydrolase AT3G49170 32.008 1.02e-80 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g0373 - - gmx:100790367 900.968
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g0373 3 2640511 2642001 Aed6g1590 6 19894974 19896629 ECH
Aed3g0373 3 2640511 2642001 Aed3g0373 3 2640511 2642001 ECH