Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1486 ATGGCTGCAACAGCATCAAGGTTCATCAAGTGTGTGACAGTTGGGGATGGAGCTGTAGGCAAAACTTGCATGCTTATTTGCTACACAAGCAACAAATTCCCCACGGACTATGTTCCAACAGTGTTTGATAATTTCAGTGCAAATGTGGTTGTTGAAGGCACAACTGTCAATTTAGGCCTCTGGGACACTGCTGTTTCTTATGAACCTGAATGGATTTTGTCATGTGAAATGGCAAAGGTTGTAATGTTCCACTTGCTTCCACTGTCTTCCTTAGGGCAAGAGGATTACAACAGATTGAGGCCATTGAGCTACAGGGGAGCAGATGTCTTTGTCTTGGCTTTCTCTTTATGGGTTCCTGAACTGCAGCATTTTGCTCCTGGTGTCCCAGTGGTGCTAGTTGGCACCAAATTGGATCTCCGAGAAGACAAGTACTATTTGGCTGATCATCCTGGTGTGGTGCCTGTGACTTCTCAGCAAGGGGAGGAATTGCGTAAACTGGTAGGAGCTACATATTATATAGAGTGCAGCTCAAAAACTCAGCAGAATGTGAAGTCGATTTTTGATGCTGCTATCAAGGTGGTCATCAAGCCGCCACAAAAACAAGAGAAGAAGAAAAAACCACGCCGAGGCTGTCTACTAAATGTCATCTGTGGAAGGAATATAGTTCGTTTTAAAAGATGA 681 0.442 MAATASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYVPTVFDNFSANVVVEGTTVNLGLWDTAVSYEPEWILSCEMAKVVMFHLLPLSSLGQEDYNRLRPLSYRGADVFVLAFSLWVPELQHFAPGVPVVLVGTKLDLREDKYYLADHPGVVPVTSQQGEELRKLVGATYYIECSSKTQQNVKSIFDAAIKVVIKPPQKQEKKKKPRRGCLLNVICGRNIVRFKR 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1486 226 PRINTS Transforming protein P21 ras signature 126 139 - -
Aed6g1486 226 PRINTS Transforming protein P21 ras signature 49 71 - -
Aed6g1486 226 PRINTS Transforming protein P21 ras signature 172 194 - -
Aed6g1486 226 PRINTS Transforming protein P21 ras signature 32 48 - -
Aed6g1486 226 PRINTS Transforming protein P21 ras signature 9 30 - -
Aed6g1486 226 Pfam Ras family 92 194 IPR001806 GO:0003924|GO:0005525
Aed6g1486 226 Pfam Ras family 10 64 IPR001806 GO:0003924|GO:0005525
Aed6g1486 226 ProSiteProfiles small GTPase Ras family profile. 4 213 IPR001806 GO:0003924|GO:0005525
Aed6g1486 226 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 194 IPR027417 -
Aed6g1486 226 Gene3D - 7 208 IPR027417 -
Aed6g1486 226 TIGRFAM small_GTP: small GTP-binding protein domain 9 64 IPR005225 GO:0005525
Aed6g1486 226 CDD Rop_like 8 195 - -
Aed6g1486 226 ProSiteProfiles small GTPase Rho family profile. 2 194 - -
Aed6g1486 226 SMART rab_sub_5 9 197 - -
Aed6g1486 226 PANTHER RHO FAMILY GTPASE 1 216 IPR003578 GO:0005525|GO:0007264
Aed6g1486 226 ProSiteProfiles small GTPase Rab1 family profile. 4 226 - -
Aed6g1486 226 PANTHER RAC-LIKE GTP-BINDING PROTEIN ARAC10-RELATED 1 216 - -
Aed6g1486 226 SMART ras_sub_4 6 197 - -
Aed6g1486 226 SMART rho_sub_3 11 197 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1486 Aed-Chr6 19141400 19144417 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1486 9 197 EF-hand Containing Proteins AT5G27540 23.810 1.44e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1486 K04392 - gmx:100806681 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1486 6 19141400 19144417 Aed6g1486 6 19141400 19144417 ECH
Aed6g1486 6 19141400 19144417 Aed10g0968 10 8416177 8420678 PCT