Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0968 ATGGCTTCCGCAACTGCCCCAAGATTCATCAAGTGTGTGACCGTTGGTGATGGAGCTGTAGGGAAGACCTGCATGCTCATTTGCTACACCAGCAACAAATTCCCCACGGACTATATCCCCACTGTGTTTGATAATTTCAGTGCAAATGTTGTTGTTGAAGGCATAACTGTCAATTTAGGCCTTTGGGATACAGCTGGGCAAGAGGATTACAACAGGCTGAGGCCCTTGAGCTACAGGGGGGCAGATGTCTTTGTCTTGGCTTTTTCTTTAGTTAGTCGCGCAAGCTATGAGAATGTGCTGAAGAAGTGGATCCCTGAACTCCAGCACTTTGCCCCTGGCATCCCATTGGTATTAGTTGGCACCAAATTGGATCTGCGCGAAGACAAGCACTATATGGCTGATCATCCTGGCTTGGTGCCAGTGACTACTGAGCAAGGCGAGGAACTCCGTAAACATATTGGAGCTACCTATTATATTGAGTGCAGCTCAAAAACTCAGCAGAATGTGAAGGCAGTTTTTGATGCTGCTATCAGAATGGTCATCAAGCCTCCACAAAAGCAAAACGAGAAGAGGAAGAAAAAACCACGTGGCTGTTTCCTAAACGTGCTCTGTGGAAGGAACATTGTTCGTCTTAAATGA 639 0.4664 MASATAPRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGITVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHFAPGIPLVLVGTKLDLREDKHYMADHPGLVPVTTEQGEELRKHIGATYYIECSSKTQQNVKAVFDAAIRMVIKPPQKQNEKRKKKPRGCFLNVLCGRNIVRLK 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0968 212 ProSiteProfiles small GTPase Rab1 family profile. 3 212 - -
Aed10g0968 212 ProSiteProfiles small GTPase Rho family profile. 3 180 - -
Aed10g0968 212 PRINTS Transforming protein P21 ras signature 158 180 - -
Aed10g0968 212 PRINTS Transforming protein P21 ras signature 10 31 - -
Aed10g0968 212 PRINTS Transforming protein P21 ras signature 33 49 - -
Aed10g0968 212 PRINTS Transforming protein P21 ras signature 50 72 - -
Aed10g0968 212 PRINTS Transforming protein P21 ras signature 112 125 - -
Aed10g0968 212 TIGRFAM small_GTP: small GTP-binding protein domain 10 174 IPR005225 GO:0005525
Aed10g0968 212 PANTHER - 1 205 - -
Aed10g0968 212 Gene3D - 3 200 IPR027417 -
Aed10g0968 212 PANTHER RHO FAMILY GTPASE 1 205 IPR003578 GO:0005525|GO:0007264
Aed10g0968 212 Pfam Ras family 11 181 IPR001806 GO:0003924|GO:0005525
Aed10g0968 212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 180 IPR027417 -
Aed10g0968 212 SMART ras_sub_4 7 183 - -
Aed10g0968 212 CDD Rop_like 9 181 - -
Aed10g0968 212 ProSiteProfiles small GTPase Ras family profile. 5 203 IPR001806 GO:0003924|GO:0005525
Aed10g0968 212 SMART rab_sub_5 10 183 - -
Aed10g0968 212 SMART rho_sub_3 12 183 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0968 Aed-Chr10 8416177 8420678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0968 6 196 EF-hand Containing Proteins AT5G27540 25.773 1.14e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0968 K04392 - gmx:100499774 432.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1486 6 19141400 19144417 Aed10g0968 10 8416177 8420678 PCT