Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1473 ATGGAAAAGATCATATTCCAAGGGAAATCAGAATTCCAAGAGCTTCTTGTATTTGAGTCTATTGTATCTGATCATTCATCTACACATGGGAAGGTTGCAATTCTTGATGGGTATATCCAGCTGACAGAAAATGATGAATTTGCTTACCAAGAGATGCTCACTCACCTTCCACTCTGTTCCATTCCAAATCCAAACAAGGTTCTGCTTGTTGGAGGGGGAGATGGTGGAATTCTTAGGGAAATATCACGCCATTCTTCTGTTGAGCATATTGATATATGTGAAATAGACAAAATGGTCATTGATGTTTATAAGAAGTTTTTCCCAGATATAGCTGTTGGTTACGAGGATCCCCGAGTGCATGTTCATATCAGAGATGGAATTGCATTCATCAACTCTGTTCCAGAGGGCACTTACGATGTCATTATATTGGATGCTTTTCAACCAATGGGTAAAAAAGCCTCCTTTCTGCCAAATATCAAATTTAAAATTGGAAATGAAGTGAGAAAAGAACATGCACCTCAGAGACATGAGGAAATTCAATGTGATGCAGGACCTATTGCGGAAGTTCTTGCTGATAACTGCTTCTTAGAATCAGTAGCAAAGGCTCTTCGACCCGGTGGAGTGTTGTCTGCTCCAGCAGACAGCTTGTGGCATAAGAACTTTGTGGTTGCAGATACCATTGCAAATTGCAAGAAAATATTCAAAGGCTCCGTTAACTATGCTTGGACCACAGTTCCTACATATGCAAGTGGGGTGATCGGATTCATGCTTTGCTCCACGGAGGGTCCCCCAGTGAACTTCAAATACCCAATAAATCCATTGAATCCTGAGCAAAATGGGATCCATGCTGCTGCATTCTGTCTGCCTTCTTTTGTGGACAAGGTTGTTGATCCAAAAAGATATTGA 906 0.4106 MEKIIFQGKSEFQELLVFESIVSDHSSTHGKVAILDGYIQLTENDEFAYQEMLTHLPLCSIPNPNKVLLVGGGDGGILREISRHSSVEHIDICEIDKMVIDVYKKFFPDIAVGYEDPRVHVHIRDGIAFINSVPEGTYDVIILDAFQPMGKKASFLPNIKFKIGNEVRKEHAPQRHEEIQCDAGPIAEVLADNCFLESVAKALRPGGVLSAPADSLWHKNFVVADTIANCKKIFKGSVNYAWTTVPTYASGVIGFMLCSTEGPPVNFKYPINPLNPEQNGIHAAAFCLPSFVDKVVDPKRY 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1473 301 Gene3D Spermidine synthase, tetramerisation domain 1 42 IPR037163 -
Aed6g1473 301 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 2 296 IPR029063 -
Aed6g1473 301 PANTHER SYNTHASE 1, PUTATIVE-RELATED 1 161 - -
Aed6g1473 301 PANTHER SYNTHASE 1, PUTATIVE-RELATED 183 297 - -
Aed6g1473 301 PANTHER SPERMIDINE/SPERMINE SYNTHASE 1 161 IPR001045 GO:0003824
Aed6g1473 301 Pfam Spermine/spermidine synthase domain 46 154 - -
Aed6g1473 301 Pfam Spermine/spermidine synthase domain 182 267 - -
Aed6g1473 301 Gene3D Vaccinia Virus protein VP39 43 300 IPR029063 -
Aed6g1473 301 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 1 260 IPR030374 -
Aed6g1473 301 Hamap Polyamine aminopropyltransferase [speE]. 1 297 IPR001045 GO:0003824
Aed6g1473 301 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 67 80 IPR030373 -
Aed6g1473 301 PANTHER SPERMIDINE/SPERMINE SYNTHASE 183 297 IPR001045 GO:0003824
Aed6g1473 301 Pfam Spermidine synthase tetramerisation domain 2 43 IPR035246 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1473 Aed-Chr6 19079729 19081898 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1473 K00797 - gmx:100788406 471.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0962 10 8338430 8343372 Aed6g1473 6 19079729 19081898 ECH
Aed6g1473 6 19079729 19081898 Aed6g1473 6 19079729 19081898 ECH