Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0962 ATGGAGAATCATCCTCCAGGAGGTATGATCATCAATGGTAAAATTGGCTTCTCTACTCCAAATTTCACACATGATCATTTACACGATGGAGAGCCTCAAATTCGTGTACATCCACAAATTCCAGGATGGTTTCCAGAGTATTCTCCATTATGGCCAGGACAAGCACACTTCTTGAAGGTAGAAAAGATTTGTTTCCAAGGGAAATCTGAATACCAGAATATGCTTGTTTTTCAGTCATCAACATATGGTAAGGTTTTTGTCCTTGATGGAGCACTCCAACTCACAGAGAAGGACGAATGTGCTTACCAAGAAATGATGACTCACCTTCCCCTTTGCTCAATCCCTAACCCAAAAAAGGTGCTGCTTATTGGTGGTGGAGATGGGGGCATCTTAAGGGAAATTTCCCGCCACTCGTCCGTTGAACAAATCGACATATGTGAAATAGACACAATGCTGATTGATGTCTATAAAGAATTTTTCCCTGACGTGGCTGTTGGATACAAGGACCCTCGAGTCAAGATTCATATTATAGATGGAACTCTATTTTTGAATTCTGTCCCAAGAGGAACCTATGATGCAATAATAGTGGATGCCTTCGACCCAATAAGAGCTGATCATGAGCTTTTTGAATCTGAGTTCTTTGAACTGATCTCAAAGGCTCTTGGTCCAGGAGGAGTATTGTGCATCCAAGCAGAGAGTATTTGGTTTAAGTCATTGGACATTCAACAACTCTTCACCAAATGCCGCCAAACTTTCAAAGGCTCCACTCATTATGCATGGACAACTGTACCTGCATATCCAAGGCAAGCATCAATACTCAACCCTTATGAATATATAATACTTAATGAAAATGGGGTCATTGGTTTCTTGCTATGTTCCACCGAAGGTCCATATGTCGACTTCAGAAATCCAGTTAACCCGATCGATCCCGAAAATTATGGCATCTCAAAGCAACCCTTGAAGTTTTACAACTCAGAAGTTCATTCAGCTGCGTTTTGCTTGCCATCTTTTGCCAAAAGGTTCTCCAATTCCAAAACCTAA 1041 0.4121 MENHPPGGMIINGKIGFSTPNFTHDHLHDGEPQIRVHPQIPGWFPEYSPLWPGQAHFLKVEKICFQGKSEYQNMLVFQSSTYGKVFVLDGALQLTEKDECAYQEMMTHLPLCSIPNPKKVLLIGGGDGGILREISRHSSVEQIDICEIDTMLIDVYKEFFPDVAVGYKDPRVKIHIIDGTLFLNSVPRGTYDAIIVDAFDPIRADHELFESEFFELISKALGPGGVLCIQAESIWFKSLDIQQLFTKCRQTFKGSTHYAWTTVPAYPRQASILNPYEYIILNENGVIGFLLCSTEGPYVDFRNPVNPIDPENYGISKQPLKFYNSEVHSAAFCLPSFAKRFSNSKT 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0962 346 Pfam Spermine/spermidine synthase domain 99 269 - -
Aed10g0962 346 Gene3D Vaccinia Virus protein VP39 96 345 IPR029063 -
Aed10g0962 346 Gene3D Spermidine synthase, tetramerisation domain 28 95 IPR037163 -
Aed10g0962 346 PANTHER SPERMIDINE/SPERMINE SYNTHASE 41 344 IPR001045 GO:0003824
Aed10g0962 346 Pfam Spermidine synthase tetramerisation domain 42 96 IPR035246 -
Aed10g0962 346 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 120 133 IPR030373 -
Aed10g0962 346 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 41 341 IPR029063 -
Aed10g0962 346 PANTHER SPERMIDINE SYNTHASE 41 344 - -
Aed10g0962 346 CDD AdoMet_MTases 141 230 - -
Aed10g0962 346 TIGRFAM speE: spermidine synthase 43 337 IPR001045 GO:0003824
Aed10g0962 346 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 41 294 IPR030374 -
Aed10g0962 346 Hamap Polyamine aminopropyltransferase [speE]. 42 343 IPR001045 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0962 Aed-Chr10 8338430 8343372 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0962 K00797 - gmx:100785862 591.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0962 10 8338430 8343372 Aed6g1473 6 19079729 19081898 ECH
Aed10g0962 10 8338430 8343372 Aed10g0962 10 8338430 8343372 ECH