Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1420 ATGGGAATGGAAGAGGAGAGTAGCAACATAATAGAAGGCCACGAAGGTGGTGCTTCGCTGCCATCATCGGGTTCAGACGCGAAGAAGAGAAGAGTGACGTACTTCTACGAACCCACGATCGGCGATTACTACTACGGGCAAGGGCACCCAATGAAGCCGCACCGAATCCGCATGGCGCACAATCTTATCGTGCACTATTCCCTCCACCGCCGCATGGAGATTAACCGCCCCTTCCTGGCCTCCCCCGCCGACATCCGCCGCTTCCACTCCGACGACTACGTCGACTTCCTCTCCTCCGTCTCCCCCGAGACCCTCGCCGACCCCTCCTTCTCCCGCCACCTCAAGCGCTTCAACGTCGGCGAGGACTGCCCCGTCTTCGACGGCCTCTTCACCTTCTGCCAGGCCTCCGCCGCCGGCTCCCTCTCCGCCGCCGTCAAACTCAACCGCGCCGACGCTGACATCGCCATCAATTGGGCCGGCGGCCTCCATCACGCCAAGAAGTCCGAGGCCTCTGGATTCTGTTACGTCAACGACATTGTCCTTGGTATCCTCGAACTCCTCAAAGTTCACAGGCGTGTGCTGTATGTTGACATTGATGTTCACCACGGTGATGGTGTTGAGGAGGCCTTTTACACCACTGATAGAGTGATGACGGTGTCTTTCCATAAGTTTGGGGACTTTTTCCCTGGCACAGGGCACTTGAAAGACATTGGGGTGGGCTCAGGAAAGAATTATGCAGTCAATGTCCCATTAAATGACGGAATGGATGATGAGAGTTTCCGTAGTATGTTTCGACCCATCATTCAAAAAGTCATGGAGGTTTATCAACCCGAGGCAGTTGTTCTACAATGTGGAGCTGATTCATTGTCTGGTGACAGGCTGGGTTGCTTCAACTTGTCTGTGAGAGGTCATGCAGATTGCCTTCGTTTTCTTAGATCTTTCAATGTTCCTTTAATGGTCTTGGGTGGGGGTGGATATACAATTCGGAATGTTGCCCGTTGCTGGTGTTATGAGACAGCAGTGGCAGTAGGAGTGGAGCCTGATAATAAGTTGCCTTATAATGAATATTATGAATATTTTGGCCCAGATTATACTCTCTTTGTCGATCCAAGCAACATGGAGAACCTAAACACACCCAAGGATATGGAAAAAATGAGGACCACATTACTAGAACAGATTTCCCGGCTTTCCCATGCTCCCAGTATACCTTTTCAGACACCACCACCTACCTTACCAATTCCAGAGGAGGCGGAAGAGGACATGGATAGAAGACCAAAGCTTCGCAAATGGGACGGTGAAGATTATGATTCTGATCCTGATCCTGACGAAGGTGGAATGGCTAATTCCAAGTTCTCAAATGTCCCTGACCATATGAGGGACATTGCAGATGACATGGAAGAAGACAAGCCAGAAGTGCATCCATCATCTTGTTGTTGA 1437 0.5101 MGMEEESSNIIEGHEGGASLPSSGSDAKKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYSLHRRMEINRPFLASPADIRRFHSDDYVDFLSSVSPETLADPSFSRHLKRFNVGEDCPVFDGLFTFCQASAAGSLSAAVKLNRADADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHLKDIGVGSGKNYAVNVPLNDGMDDESFRSMFRPIIQKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVRGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLFVDPSNMENLNTPKDMEKMRTTLLEQISRLSHAPSIPFQTPPPTLPIPEEAEEDMDRRPKLRKWDGEDYDSDPDPDEGGMANSKFSNVPDHMRDIADDMEEDKPEVHPSSCC 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1420 478 MobiDBLite consensus disorder prediction 456 478 - -
Aed6g1420 478 Pfam Histone deacetylase domain 49 340 IPR023801 -
Aed6g1420 478 PANTHER HISTONE DEACETYLASE 15 468 - -
Aed6g1420 478 PIRSF HDAC_I_euk 15 474 IPR003084 GO:0004407|GO:0016575
Aed6g1420 478 CDD HDAC_classI 35 342 - -
Aed6g1420 478 SUPERFAMILY Arginase/deacetylase 30 395 IPR023696 -
Aed6g1420 478 PRINTS Histone deacetylase superfamily signature 192 207 IPR000286 -
Aed6g1420 478 PRINTS Histone deacetylase superfamily signature 160 183 IPR000286 -
Aed6g1420 478 PRINTS Histone deacetylase superfamily signature 277 287 IPR000286 -
Aed6g1420 478 Gene3D Histone deacetylase domain 28 403 IPR037138 -
Aed6g1420 478 PRINTS Histone deacetylase signature 238 251 IPR003084 GO:0004407|GO:0016575
Aed6g1420 478 PRINTS Histone deacetylase signature 255 273 IPR003084 GO:0004407|GO:0016575
Aed6g1420 478 PRINTS Histone deacetylase signature 51 68 IPR003084 GO:0004407|GO:0016575
Aed6g1420 478 PRINTS Histone deacetylase signature 138 158 IPR003084 GO:0004407|GO:0016575
Aed6g1420 478 PRINTS Histone deacetylase signature 179 195 IPR003084 GO:0004407|GO:0016575
Aed6g1420 478 PRINTS Histone deacetylase signature 84 102 IPR003084 GO:0004407|GO:0016575
Aed6g1420 478 PRINTS Histone deacetylase signature 117 134 IPR003084 GO:0004407|GO:0016575
Aed6g1420 478 MobiDBLite consensus disorder prediction 1 26 - -
Aed6g1420 478 PANTHER HISTONE DEACETYLASE 15 468 - -
Aed6g1420 478 MobiDBLite consensus disorder prediction 416 435 - -
Aed6g1420 478 MobiDBLite consensus disorder prediction 397 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1420 Aed-Chr6 18626096 18630952 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1420 K06067 - gmx:100807923 892.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1420 6 18626096 18630952 Aed6g1420 6 18626096 18630952 ECH
Aed6g1420 6 18626096 18630952 Aed10g0899 10 7570494 7573747 PCT