Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed6g1410 | ATGGATCCCCACCCAGGAAAGTTCCCCGTTCTCTCCTACGTGATGTCCCGCCTCCCTTCCTTCGGTGCTAGAACGCCCACCGCCACCTCCCCTTCCAATTCCAATTCCCCTTCCCCTTTCGACATCGAGCGACCACAATCTCTCCTCTCTCCTTCTTCTTCTTCTTCTCCTTCCACCATCGTGGGCAAAATGCCGAATCTCGCCGACCCCGAAGTGCTCGCCTCCATGACCAGCGCCATCTCCGAGGTCTCCCAGGCCCGCTCCGTCCTCAAGCTCATCGGCGCCCGCCCCACCCACGAGGAGATCGACGACGCCAAAGCCAAGCTCACCGACCTCGAGGCCCATCTCTCCCGCCAGCTCGAGGAGATCGTGGGCCTCCCCAGGCCCCCCGAGATCGACGAGCCACGTTGGCGGGCCCACATCACCCAGAAAGAAATGGCCTGCAGGGAATCCACCGAGAAAGATAAACGCATTCTGAAGTCTCTCATTCAGCTCGACCAGATGCATGACTCCTACGCCAAGCTCCTCAAGGACGCCGAGAACCGTCTCGTCAAGATTTACGAGGACCACGGCCAAAACGACGAAACTGAAAACGAAAACGACATAAAAAACAATGACAACGACGGTGAGGTGAAAGAACAGGTTGAGGAGATTTTGCATGAGTCCTACGGTAAAGGCGTCGAGCGTGTAGATCTCTCCGGGAAGCGCCTCAAGCGCCTGCCTGAAGCATTCGGCCACATTCCTGCACTCGTCGTCCTCGATGTCTCCACCAATCAACTTTCGGTGATTCCTGACTCGATATCCGGATTGCATAATCTCGAGGATCTTAATGTCTCCTCCAATGTTTTGGAGTCGCTTCCGGATTCAATTGGTTTGCTGCAGAAGTTGAAATTCCTCAATGTCTCTGGAAACAAGCTCACTGCCCTTCCTGATTCCATCAGTCAATGCAGGTCATTGGTGGAGCTAGACGCAAGCTTTAACAGCCTGGCGTATTTGCCAACGAACATTGGATACGAGTTGGTTAGGTTACAGAAGCTCTTGGTTCAGTTGAACAAGATTCGATCTCTTCCCTCGTCCGTTTGTGAGATGAAATCATTGCGCTATCTCGATGCTCACTTTAACGAGCTGCGGGGGCTACCTATTGCAATTGGGAAACTGACTAATCTAGAAGTTCTGAACCTGAGCAGTAACTTTAGTGACCTTAAAGAACTTCCGGAGTCATTTTCTGATCTGATTAGCCTCCAGGAGTTGGATCTCAGCAACAACCAAATCCATGCACTTCCTGATACTTTTGGCCGCCTTGATAGTTTGAACAAGCTAAACCTGGATCAGAATCCTATTGAAGTGCCACCTATGGAGATTGTGAATCAGGGGGTCTATGCAATAAAGAATTTCATGGTCCAGAGGCGGATTGATATATTGACAGAAGAAGACAGAAGAAGCCCCAAAGTGTTGCAAGAAGATGGACAGCATGACTGGGTAGCACGAAGCGCCTCTTGGCTCAAGAATGTTTCTGAGATGGTTATGTCCCCCAAAACTCCCAAGGAGTCTTTTCTTAATCAGCAGCTATGA | 1572 | 0.5121 | MDPHPGKFPVLSYVMSRLPSFGARTPTATSPSNSNSPSPFDIERPQSLLSPSSSSSPSTIVGKMPNLADPEVLASMTSAISEVSQARSVLKLIGARPTHEEIDDAKAKLTDLEAHLSRQLEEIVGLPRPPEIDEPRWRAHITQKEMACRESTEKDKRILKSLIQLDQMHDSYAKLLKDAENRLVKIYEDHGQNDETENENDIKNNDNDGEVKEQVEEILHESYGKGVERVDLSGKRLKRLPEAFGHIPALVVLDVSTNQLSVIPDSISGLHNLEDLNVSSNVLESLPDSIGLLQKLKFLNVSGNKLTALPDSISQCRSLVELDASFNSLAYLPTNIGYELVRLQKLLVQLNKIRSLPSSVCEMKSLRYLDAHFNELRGLPIAIGKLTNLEVLNLSSNFSDLKELPESFSDLISLQELDLSNNQIHALPDTFGRLDSLNKLNLDQNPIEVPPMEIVNQGVYAIKNFMVQRRIDILTEEDRRSPKVLQEDGQHDWVARSASWLKNVSEMVMSPKTPKESFLNQQL | 523 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed6g1410 | 523 | Pfam | Leucine rich repeat | 227 | 283 | IPR001611 | GO:0005515 | |
| Aed6g1410 | 523 | Pfam | Leucine rich repeat | 405 | 447 | IPR001611 | GO:0005515 | |
| Aed6g1410 | 523 | PANTHER | PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 | 35 | 504 | - | - | |
| Aed6g1410 | 523 | Coils | Coil | 102 | 122 | - | - | |
| Aed6g1410 | 523 | MobiDBLite | consensus disorder prediction | 21 | 63 | - | - | |
| Aed6g1410 | 523 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING | 35 | 504 | - | - | |
| Aed6g1410 | 523 | Gene3D | Ribonuclease Inhibitor | 162 | 342 | IPR032675 | - | |
| Aed6g1410 | 523 | MobiDBLite | consensus disorder prediction | 22 | 62 | - | - | |
| Aed6g1410 | 523 | Gene3D | Ribonuclease Inhibitor | 343 | 466 | IPR032675 | - | |
| Aed6g1410 | 523 | ProSiteProfiles | Leucine-rich repeat profile. | 413 | 434 | IPR001611 | GO:0005515 | |
| Aed6g1410 | 523 | ProSiteProfiles | Leucine-rich repeat profile. | 272 | 293 | IPR001611 | GO:0005515 | |
| Aed6g1410 | 523 | SMART | LRR_bac_2 | 386 | 407 | - | - | |
| Aed6g1410 | 523 | SMART | LRR_bac_2 | 411 | 430 | - | - | |
| Aed6g1410 | 523 | SMART | LRR_bac_2 | 316 | 335 | - | - | |
| Aed6g1410 | 523 | SMART | LRR_bac_2 | 293 | 312 | - | - | |
| Aed6g1410 | 523 | SMART | LRR_bac_2 | 270 | 289 | - | - | |
| Aed6g1410 | 523 | SMART | LRR_bac_2 | 363 | 382 | - | - | |
| Aed6g1410 | 523 | SMART | LRR_bac_2 | 340 | 359 | - | - | |
| Aed6g1410 | 523 | SMART | LRR_bac_2 | 247 | 266 | - | - | |
| Aed6g1410 | 523 | ProSiteProfiles | Leucine-rich repeat profile. | 295 | 316 | IPR001611 | GO:0005515 | |
| Aed6g1410 | 523 | SUPERFAMILY | L domain-like | 217 | 452 | - | - | |
| Aed6g1410 | 523 | MobiDBLite | consensus disorder prediction | 189 | 208 | - | - | |
| Aed6g1410 | 523 | SMART | LRR_typ_2 | 340 | 363 | IPR003591 | - | |
| Aed6g1410 | 523 | SMART | LRR_typ_2 | 247 | 269 | IPR003591 | - | |
| Aed6g1410 | 523 | SMART | LRR_typ_2 | 386 | 410 | IPR003591 | - | |
| Aed6g1410 | 523 | SMART | LRR_typ_2 | 270 | 292 | IPR003591 | - | |
| Aed6g1410 | 523 | SMART | LRR_typ_2 | 317 | 339 | IPR003591 | - | |
| Aed6g1410 | 523 | SMART | LRR_typ_2 | 293 | 316 | IPR003591 | - | |
| Aed6g1410 | 523 | SMART | LRR_typ_2 | 411 | 434 | IPR003591 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed6g1410 | Aed-Chr6 | 18564106 | 18566906 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed6g1410 | 230 | 452 | Receptor kinase-like Gene Family | AT5G56040 | 30.000 | 6.95e-14 | 72.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed6g1410 | - | - | gmx:100782818 | 810.061 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Aed6g1410 | 6 | 18564106 | 18566906 | Aed6g1410 | 6 | 18564106 | 18566906 | ECH | |
| Aed6g1410 | 6 | 18564106 | 18566906 | Aed10g0889 | 10 | 7440435 | 7445005 | PCT |