Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0889 ATGGATCCCAATCCCGGAACCTTCCCTCTCCTCTCCTTCATCATGTCGCGCCTCCCTTCCCTCACTCCCAGACCGGCGCCGGCGGCACCCTCCGATTCCGACCAATTCGACATCGAGCAGCCACGTTCCCTAGAAATCGTGGGCCAAATGCCGCACCTCGCGGACCCGGAGCTCGTGGCCTCCATGGGCCGGGCCGTGGCCCAGGTCACGCAGGCCCGCACGGTCCTCAACCTGATCGGGGAGCGCCCCACGCACGAGGACGTCGACAATGCCCGGGCCAAGCTGGCGGAGCTCGAGGCCCACCTCTCCCGCGAGCTCGAACACATCGTGCTGCAGGCCCGGCCCGCGGAGATCGAGATCCACGGGTGGCGGGCCCACCAGGCCGAGATGGAGAGGGAGTGCAGAGAGCGGGCCGAGACGGAGAAGCGCGTGTGGAGATCGGTGCTGCAGCTCGACGAGATGCACGAGGCCTACGAGAAGCTTCTGAAGGATGCGGAGAAGCGCCTCGTGAAAATGTACGAGTCCAAGGATGATGATGATGCTGACTTGGCCGGCGAGGAAGTCAACGAAGACGTTGTGGGGATTCTGCAAGAGTCGTACGGCAAAGGTATGGAACGAGTCAATCTTTCTGGACGCCAATTGAAACTCTTGCCTGAGGCTTTTGGTCGCATCTCTGGCTTGCTCGTTCTTGATCTTTCAACCAATCAACTCTCGGCAATTCCTGATTCAATAGCTGGATTGCAAAACCTTGAGGAGCTTGATCTGTCTTCAAATCTTTTGGAATCACTACCAGATTCAATTGGGTTGTTACAGAAGTTGAAATTGCTCAATGTCTCTGGAAACAAGCTGGCTGCGCTTCCTGATCCCATCTGCCAGTGCAGGTCATTGGTGGAGTTGGATGTGAGCTTTAACAATCTCTCATATCTTCCAACAAACATTGGATATGAATTACCGAACTTGCAGAAACTCATTATTCATCTGAACAAGATTCGATCTTTTCCCTCATCTATCTGTGAGTTGAAGTCCTTGCGCTATGTGGATGCTCACTTTAACGAGCTACATGGGCTTCCAATTGCAATTGGGAGATTGACTAATCTTGAAGTTCTCAACCTGAGCAGTAACTTCAGTGACCTCAAAGAACTTCCTGAGACATTTGGTGATTTGACTAACCTCAGGGAATTGGATCTCAGCAACAATCAGATTCATGCACTTCCTGATACGTTTGGCCGCCTTGATAACTTGACCAAGCTCAACTTGGAACAGAATCCTCTTGAATTGCCACCAATGGAGATTGTAAATCAAGGGGTTGAAGCTGTAAAGACCTTCATGGCCAAGAGGTGGCTTGATATATTGTTGGAGGAAGAAAGGAAAAGCAACCAAGAAATGCAAGAACAAGAACAGGGTGGTTGGTTAACACGAAGCACCTCCTGGTTGAAGAATGTTTCTGGAAATGTAATTGAGTATATTGGAGCCGTTGGATCTCCTATGTCACCTAAATCTCCAAGAGATGCATTACTTGATCAGCAGTTATGA 1533 0.5127 MDPNPGTFPLLSFIMSRLPSLTPRPAPAAPSDSDQFDIEQPRSLEIVGQMPHLADPELVASMGRAVAQVTQARTVLNLIGERPTHEDVDNARAKLAELEAHLSRELEHIVLQARPAEIEIHGWRAHQAEMERECRERAETEKRVWRSVLQLDEMHEAYEKLLKDAEKRLVKMYESKDDDDADLAGEEVNEDVVGILQESYGKGMERVNLSGRQLKLLPEAFGRISGLLVLDLSTNQLSAIPDSIAGLQNLEELDLSSNLLESLPDSIGLLQKLKLLNVSGNKLAALPDPICQCRSLVELDVSFNNLSYLPTNIGYELPNLQKLIIHLNKIRSFPSSICELKSLRYVDAHFNELHGLPIAIGRLTNLEVLNLSSNFSDLKELPETFGDLTNLRELDLSNNQIHALPDTFGRLDNLTKLNLEQNPLELPPMEIVNQGVEAVKTFMAKRWLDILLEEERKSNQEMQEQEQGGWLTRSTSWLKNVSGNVIEYIGAVGSPMSPKSPRDALLDQQL 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0889 510 SMART LRR_typ_2 317 340 IPR003591 -
Aed10g0889 510 SMART LRR_typ_2 363 387 IPR003591 -
Aed10g0889 510 SMART LRR_typ_2 388 411 IPR003591 -
Aed10g0889 510 SMART LRR_typ_2 224 246 IPR003591 -
Aed10g0889 510 SMART LRR_typ_2 247 269 IPR003591 -
Aed10g0889 510 SMART LRR_typ_2 270 293 IPR003591 -
Aed10g0889 510 SMART LRR_typ_2 294 316 IPR003591 -
Aed10g0889 510 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 4 493 - -
Aed10g0889 510 SUPERFAMILY L domain-like 204 424 - -
Aed10g0889 510 Coils Coil 88 108 - -
Aed10g0889 510 PANTHER LEUCINE-RICH REPEAT-CONTAINING 4 493 - -
Aed10g0889 510 Pfam Leucine rich repeat 365 424 IPR001611 GO:0005515
Aed10g0889 510 Pfam Leucine rich repeat 294 353 IPR001611 GO:0005515
Aed10g0889 510 Pfam Leucine rich repeat 215 260 IPR001611 GO:0005515
Aed10g0889 510 Gene3D Ribonuclease Inhibitor 377 438 IPR032675 -
Aed10g0889 510 Gene3D Ribonuclease Inhibitor 125 306 IPR032675 -
Aed10g0889 510 Gene3D Ribonuclease Inhibitor 307 376 IPR032675 -
Aed10g0889 510 PRINTS Leucine-rich repeat signature 388 401 - -
Aed10g0889 510 PRINTS Leucine-rich repeat signature 227 240 - -
Aed10g0889 510 SMART LRR_bac_2 224 243 - -
Aed10g0889 510 SMART LRR_bac_2 247 266 - -
Aed10g0889 510 SMART LRR_bac_2 317 336 - -
Aed10g0889 510 SMART LRR_bac_2 293 312 - -
Aed10g0889 510 SMART LRR_bac_2 388 407 - -
Aed10g0889 510 SMART LRR_bac_2 363 384 - -
Aed10g0889 510 SMART LRR_bac_2 270 289 - -
Aed10g0889 510 ProSiteProfiles Leucine-rich repeat profile. 390 411 IPR001611 GO:0005515
Aed10g0889 510 ProSiteProfiles Leucine-rich repeat profile. 249 270 IPR001611 GO:0005515
Aed10g0889 510 Coils Coil 148 175 - -
Aed10g0889 510 Coils Coil 448 468 - -
Aed10g0889 510 SMART LRR_sd22_2 388 416 - -
Aed10g0889 510 SMART LRR_sd22_2 247 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0889 Aed-Chr10 7440435 7445005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0889 223 463 Receptor kinase-like Gene Family AT5G56040 26.708 7.13e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0889 - - gmx:100803823 870.152
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0889 10 7440435 7445005 Aed10g0889 10 7440435 7445005 ECH
Aed6g1410 6 18564106 18566906 Aed10g0889 10 7440435 7445005 PCT