Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1344 ATGCTCTCCCAAACACTCCCCTATAGATCCAACGCTAATTCTTCTCAAGAAGCGATTTTGATTAGATTTCACAACATGAACAACAGCAATACAACGAAGAATGTTGCCGCAACGCCGTCGTTTTTCACCAATCCGGGAGCACCCTCCATTCCCATGAACCACCCACCACCGCACCTTCTTTCACAGACGCAGCAGCCTCAACCACAGGGTGCCACGTCACACTTCCACGGCCACTTTCAGCTTTCACAACCCCAAACCCACGTTGTCGCACAACAACAACAACCTCACCCACAAGTGCACAACAATGCCAACACCAACGTCAATGTCCACGTGGCAGCACCTACGCCTCCCAAGCGTGCAAATCAGAAACCCCCTTCGCGCCCTCAAGGCTCCTCTAACGCCAGCCAATCCTCCGCGTTCAAGACCATGGAGCTTACCGTGGCGCCTCCGCGGAAAAAGAGAAGCTTGGACGGTCGCGATAAGCTAATTCCGGAGAAAGTGGCAAAGCTTGTGCCTGAGTCTGCTATTTATGCTAAGTTGCTGGAACTCGAGACTCAGATAGACTCTGCTTTACTTAGGAAGAAAATTGATGTGCAGGAGAATGTGAAAAACCCTCGTTGTGTTAGGAAAACGCTTAGAATTTACGTTTACAACACTTTTTCGAATGTGGTGAAAGTGGAGCCTGGGAAGAGTGATGTGGTGGAGCCTTCTTGGGCGTTTAGGATAACCGGAAGGGTGTTGGAAGATGGTAAGGATTCTGTGGCAGACGGAATTTTGACAAAGCAATGTCCGAAATTCTCAGCTTTCTTCAAGAAGATTACTATATACTTGGATCAGGGTTGTTATCCGGATAACCATGTTGTTGTGTGGGACAGTGCTCGTTCAGCTGCGCAGCGTGATGGCTTTGAGGTGAAGAGGAAAGGAGATAAGGAATTCACTGCGGTGGTGAGAATGGCAATGAATTATTCGCCTGACAAGTTTGTGGTTTCACCGCAGCTGGCTAGAGTTTTAGGGGTTGAGTTTGACTCGCGTGCTAGGATCATAGCTGCTCTTTGGCACTATGTGAAGGCTAAGAAGCTGCAGAGCCCAAACGACCCCTCGTTCTTCATGTGTGATGCTTCTCTCCAAAGGGTGTTTGGGGAGGAGAAGATGAAGTTCTCTGTGGCATCACAGAAGATATCGCAGCATTTGTCACAGCCGCAGCCTATACACCTGGAGCATAAAATCAAGCTTTCTGGAAATGGTCCAGCCGGAAGTACTTGCTATGATGTGCAGGTTGATGTGCCTCTTCCACTGGAGAAGGATATGTCTGCGTTCTTGGCAAGCACTGAGAGGCACAAAGATATTGATGCTTTTGATGAACTGATCTGTGATTCCATAAAGAAAATCCATGAACATCACAGGAGACGGGCATTCTTTCTCGGCTTTAGTCAGTCCCCAGCAGAGTTCATTAATGCTTTGATAGTTTCTCAGAGCAAGGATCTGAAGCTTGTTGCTGGAGATGTGAGCCAGAATGTTGAAAATGAACGACGTGCTGAATTCTACAATCAACCATGGGTTGAGGATGCTGTTGTTCGCTACCTAACCCGGAAAAATGCTCGAAGTGATGCTCCTGGAAATAACTGA 1626 0.4791 MLSQTLPYRSNANSSQEAILIRFHNMNNSNTTKNVAATPSFFTNPGAPSIPMNHPPPHLLSQTQQPQPQGATSHFHGHFQLSQPQTHVVAQQQQPHPQVHNNANTNVNVHVAAPTPPKRANQKPPSRPQGSSNASQSSAFKTMELTVAPPRKKRSLDGRDKLIPEKVAKLVPESAIYAKLLELETQIDSALLRKKIDVQENVKNPRCVRKTLRIYVYNTFSNVVKVEPGKSDVVEPSWAFRITGRVLEDGKDSVADGILTKQCPKFSAFFKKITIYLDQGCYPDNHVVVWDSARSAAQRDGFEVKRKGDKEFTAVVRMAMNYSPDKFVVSPQLARVLGVEFDSRARIIAALWHYVKAKKLQSPNDPSFFMCDASLQRVFGEEKMKFSVASQKISQHLSQPQPIHLEHKIKLSGNGPAGSTCYDVQVDVPLPLEKDMSAFLASTERHKDIDAFDELICDSIKKIHEHHRRRAFFLGFSQSPAEFINALIVSQSKDLKLVAGDVSQNVENERRAEFYNQPWVEDAVVRYLTRKNARSDAPGNN 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1344 541 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 99 538 - -
Aed6g1344 541 Pfam SWIB/MDM2 domain 326 397 IPR003121 -
Aed6g1344 541 ProSiteProfiles SWIB/MDM2 domain profile. 322 399 IPR003121 -
Aed6g1344 541 MobiDBLite consensus disorder prediction 124 143 - -
Aed6g1344 541 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 99 538 - -
Aed6g1344 541 MobiDBLite consensus disorder prediction 43 76 - -
Aed6g1344 541 Gene3D SWIB/MDM2 domain 319 404 IPR036885 -
Aed6g1344 541 SUPERFAMILY SWIB/MDM2 domain 318 407 IPR036885 -
Aed6g1344 541 MobiDBLite consensus disorder prediction 83 102 - -
Aed6g1344 541 CDD SWIB_like 329 397 - -
Aed6g1344 541 MobiDBLite consensus disorder prediction 56 76 - -
Aed6g1344 541 SMART swib_2 323 402 IPR019835 -
Aed6g1344 541 MobiDBLite consensus disorder prediction 109 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1344 Aed-Chr6 18136463 18139937 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Aed6g1344 SWIB 2.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1344 K11650 - gmx:100790947 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1344 6 18136463 18139937 Aed10g0810 10 6710380 6713363 PCT