Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0810 ATGAATAATCAAGCCAATAATTCATTGTTAGGTCATTCTGGAATGATCCAACAACCACAACCACACCACCCTCAGCAATGGAACCATCCAAATCCTTTACTCTCTCAGTCACAGTCACAGTCACACCCCCAAACCCAATTCCATGGTCCCTTTCAGTTTTCAGAGCCCCAAAACCAGGTCTTTGCACAAACTCAGTATGCACAGGCACAACTGCAGTCTCAGGTTGCATGCGCTCATCCACAACCACAACCACAACCACAACCACAACCTCAAACTCAGCCTTTTGCTCACTTGCATAATATCAATACTGCTAATGGTACATCGAGTCCAGCAGCCACCAGAAGTGCCAAGCGAGCAACCCCAAAGCCACCATTGAGGTCTCATAATGTGAACCAATCCATGCCGTTTAAGGCCATGGAGTCTGCTCGGCAAAAGAAGCAAAGACCAGAAAAGGTGGCTCCACTTTTACCTGAGTCTGCTCTTTACACTGAATTGCTTGATTTTGAGGCTCAGGTGGATGCTGCTTTGGCCAGGAGAAAGACTGATATACAGGAGGCTAGACTCTCTCCCCATGTGCTGAAAACTCTTCGTGTTTGTGTGTTCAATACCTTCTCAAATCATGCAAAAACAGATGCTGAGAATAGAAAGGGTGATGAATCTTGGTGGTCTCTCAAGGTAATTGGAAGGATATTGGAAGATGGTGTAGATTCTGTCTCTGGAATTCCACAGAGATCAAGTTCTTCATACCCGAAGTTCTCTGCATTTTTCAAGAAAATTACAATACATTTGGATCAAAGCCTTTATCCTGATGATCATGTCATTGTATGGGATAGTGCTCATTCACCTACCCAACAGGATGGTTTTGAGGTGAAGAGGAAAGGAAACAAAGAATTTTCTGCAGTGATTTCAATAGAAATGAATTTTACACCTGACAAGTTTATGCTTTCATCACCACTGGCTAAACTTTTAGGGATTGAGGTAGAGACTCGCCCAAGAATAATAGCTTCTCTTTATAACTACGTGAAGTCCAGGAAGCTACAGATCCCAAATGACCCTTCATTCTTCTTCTGTGATCCTTCTCTACAAATGGTGTTTGGGGAAGAGAAGATGGATTTTGCCATGGTTTTTCAGAAGTTATCACAGCATTTGTCACAACCACAACCTATACATCTGGAGCATACCATCAAGCTTTCTGGATGTTCTCCAGCTATATCTGCATGTTACGATATACAGGTTGATGTGCCTTTTCCGCTGGAAAAGGATATGTCTACATTCTTGGCAAACCTTGAGAGTCAAAAAGAGATTGAAGCTTATGATGAGGCAATTTGCGCCTCCTTAAAGAAGATCCAGGAGCATCGTAGAAGACGGGCTTTCTTTCTTAGCTTTAGTCAGTCTCCAACAGAGTTTATTGATACTTTGATTTCTTCTCAGAGCAAGGATTTGAAACTCGTTGCTGGAGATGCCAGCAGCCATAATGTTGAAAAGGAACTTCGTTCTGAATTCTTCAATCAACCGTGGGTTGATGATGCTGTCATTCGCTACTTGAACCGCAAAGCTGCAGGAAGTGATGCTCATGGACGCAATTGA 1587 0.4297 MNNQANNSLLGHSGMIQQPQPHHPQQWNHPNPLLSQSQSQSHPQTQFHGPFQFSEPQNQVFAQTQYAQAQLQSQVACAHPQPQPQPQPQPQTQPFAHLHNINTANGTSSPAATRSAKRATPKPPLRSHNVNQSMPFKAMESARQKKQRPEKVAPLLPESALYTELLDFEAQVDAALARRKTDIQEARLSPHVLKTLRVCVFNTFSNHAKTDAENRKGDESWWSLKVIGRILEDGVDSVSGIPQRSSSSYPKFSAFFKKITIHLDQSLYPDDHVIVWDSAHSPTQQDGFEVKRKGNKEFSAVISIEMNFTPDKFMLSSPLAKLLGIEVETRPRIIASLYNYVKSRKLQIPNDPSFFFCDPSLQMVFGEEKMDFAMVFQKLSQHLSQPQPIHLEHTIKLSGCSPAISACYDIQVDVPFPLEKDMSTFLANLESQKEIEAYDEAICASLKKIQEHRRRRAFFLSFSQSPTEFIDTLISSQSKDLKLVAGDASSHNVEKELRSEFFNQPWVDDAVIRYLNRKAAGSDAHGRN 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0810 528 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 89 526 - -
Aed10g0810 528 SMART swib_2 309 388 IPR019835 -
Aed10g0810 528 MobiDBLite consensus disorder prediction 73 150 - -
Aed10g0810 528 ProSiteProfiles SWIB/MDM2 domain profile. 308 385 IPR003121 -
Aed10g0810 528 MobiDBLite consensus disorder prediction 1 52 - -
Aed10g0810 528 Pfam SWIB/MDM2 domain 312 383 IPR003121 -
Aed10g0810 528 CDD SWIB_like 315 383 - -
Aed10g0810 528 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 89 526 - -
Aed10g0810 528 MobiDBLite consensus disorder prediction 92 115 - -
Aed10g0810 528 SUPERFAMILY SWIB/MDM2 domain 304 393 IPR036885 -
Aed10g0810 528 Gene3D SWIB/MDM2 domain 305 390 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0810 Aed-Chr10 6710380 6713363 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Aed10g0810 SWIB 2.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0810 K11650 - gmx:100784907 828.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0810 10 6710380 6713363 Aed10g0810 10 6710380 6713363 ECH
Aed6g1344 6 18136463 18139937 Aed10g0810 10 6710380 6713363 PCT