Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1171 ATGAAGGTTTTTGAGTACTTTGCATCTGATCGTGGTTCAGAAGGAGAAGTACTGATGAAACCAGCAGACCTAATGCGGGCAGTGGTTCCTGTTTTCCCTCCATCTGAATCCCACCTTGTTAGAGATGGATACTTGGAAGGAGAAAGGAGGCCGGGCCATTTACGATGTCCTACTTCTGAATTTTTTATGCTTTTTGATGTAAACAATGACGGGCTGATATCTTTTAAAGAGTATATCTTTTTTGTAACACTACTCAGCATCCCGGAATCAAGCTTTTCAGTGGCATTTAAAATGTTTGATGTCGACAATAATGGGGAGATAAGCAAGGAAGAATTCAAGAAAGTGATGGCATTGATGCGATCTCATCATCGACAGGGTGTTCACCACAGGGATGGACTGCGAACTGGCCTAAAGGTGAATGATTCTGTGGAAGATGGAGGGCTGGTGGAATACTTTTTTGATAAAGATGGAAATGGACGCCTCCAGCTTGATAAATTCGTAAAATTTTTTAGAGACTTGCATGAGGAGATTCTGTGGCTGGAGTTTGCTCATTATGACTACCAATCTCGACAAACCATATCAGCCAAGGACTTTGCACTCTCCATGGTTGCTTCTGCAGACATGAGTCATCTAGGCAGGTTGCTTGAACGGGTTGATGAATTGAATGATGATCCACGCCTTAAGGATGCACGTATCACATTTGAGGACTTCAAAAACTTTGCAGAGCTACGGAAAAAGTTACTGCCATTTTCATTGGCCCTTTTCAGTTTTGGAGAAGTAAATGGCCTGTTGACAATAGACGATTTTCAAAGAGCAGCATCAAATGTATGTGGTGTGTCTCTCTCGGACAGTGTGGTTGAAATTGTTTTTCATTTGTTTGACACAAATGGGGATGGAAACCTAAGTTTTGACGAGTTCCTCAGAGTGCTACACAAGCATGAAAAGGACATTGCACAACCCGTGTAG 966 0.4224 MKVFEYFASDRGSEGEVLMKPADLMRAVVPVFPPSESHLVRDGYLEGERRPGHLRCPTSEFFMLFDVNNDGLISFKEYIFFVTLLSIPESSFSVAFKMFDVDNNGEISKEEFKKVMALMRSHHRQGVHHRDGLRTGLKVNDSVEDGGLVEYFFDKDGNGRLQLDKFVKFFRDLHEEILWLEFAHYDYQSRQTISAKDFALSMVASADMSHLGRLLERVDELNDDPRLKDARITFEDFKNFAELRKKLLPFSLALFSFGEVNGLLTIDDFQRAASNVCGVSLSDSVVEIVFHLFDTNGDGNLSFDEFLRVLHKHEKDIAQPV 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1171 321 ProSiteProfiles EF-hand calcium-binding domain profile. 87 122 IPR002048 GO:0005509
Aed6g1171 321 CDD EFh 60 117 IPR002048 GO:0005509
Aed6g1171 321 Pfam EF hand 95 118 IPR002048 GO:0005509
Aed6g1171 321 ProSiteProfiles EF-hand calcium-binding domain profile. 153 176 IPR002048 GO:0005509
Aed6g1171 321 ProSiteProfiles EF-hand calcium-binding domain profile. 281 316 IPR002048 GO:0005509
Aed6g1171 321 Gene3D - 35 124 - -
Aed6g1171 321 Pfam EF hand 61 78 IPR002048 GO:0005509
Aed6g1171 321 SUPERFAMILY EF-hand 148 313 IPR011992 -
Aed6g1171 321 SUPERFAMILY EF-hand 59 313 IPR011992 -
Aed6g1171 321 Pfam EF-hand domain pair 262 310 IPR002048 GO:0005509
Aed6g1171 321 ProSitePatterns EF-hand calcium-binding domain. 294 306 IPR018247 -
Aed6g1171 321 Gene3D - 260 319 - -
Aed6g1171 321 SMART efh_1 91 119 IPR002048 GO:0005509
Aed6g1171 321 SMART efh_1 57 85 IPR002048 GO:0005509
Aed6g1171 321 SMART efh_1 147 173 IPR002048 GO:0005509
Aed6g1171 321 SMART efh_1 285 313 IPR002048 GO:0005509
Aed6g1171 321 CDD EFh_MICU 92 311 - -
Aed6g1171 321 Gene3D - 125 250 - -
Aed6g1171 321 PANTHER CALCIUM UPTAKE PROTEIN, MITOCHONDRIAL 2 321 - -
Aed6g1171 321 ProSitePatterns EF-hand calcium-binding domain. 100 112 IPR018247 -
Aed6g1171 321 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 2 321 IPR039800 GO:0005509|GO:0006851
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1171 Aed-Chr6 16451366 16454807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1171 2 278 EF-hand Containing Proteins AT4G32060 74.368 2.20e-147 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1171 K22827 - gmx:100806575 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1171 6 16451366 16454807 Aed4g1773 4 22034035 22036400 PCT