Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g1138 ATGGGTCGGAGAGGGATCAAGCTATTCGATGAAGAAAGGAACGGTCTTTTCTCAATTTCCAATTTTGGTTCCCAATGGGGCGGTGGTGGCGGTGTTCACGGCGACCCTATGAATTTGGCTGTGATTGCAAGCATTAGTCAAATGGGAATGGGGTTTGGTGTTCAACAACCAAACCCTTCTTCTTCTGATTCTAACTCTAATTCTAATTCTGATTCCCAACACAACGGTGGCATGAGCATGAGGATTCCATGCACCGAGTTGTACATTCGTTACATGCAATCCGAGGGGAAGGTGAAGATTCTCGGAGTTCCCGAAGAAGAGGTTGTTGAGGGTGTTAAGAAGAAGAAAAAAGGTGGTGTCTTTAAAGGGTTGAGGATCAAGGTGAAGAACCCTTCTCTGAGGAGGTTGGTAAGTGGTGCCTTCGCTGGGGCGGTTTCACGCACCACTGTGGCGCCCTTGGAGACCATCAGGACTCATTTGATGGTTGGAAGCAGTGGCAATTCCACTGGGGAGGTGTTCAGGAATATCATGGACACTGATGGCTGGAAGGGCTTGTTCAGGGGTAATTTCGTCAATGTCATTCGTGTTGCTCCTAGCAAGGCCATTGAGCTATTTGCTTATGATACTGTTAACAAGAGCCTCTCACCAAAGCCAGGGGAGCAGCCCAAAGTCCCTATTCCAGCATCATTCATAGCAGGTGCTTGTGCTGGAAGGGGTGTTTATGATGGTCTACTAGATGCATTCGTGAAAATAATTAAAGAAGAGGGTGCTGGTGAACTTTACAGAGGCCTTACTCCGAGTCTGATTGGAGTAATTCCATATTCTGCCACCAACTACTTTGCCTATGACACATTGAGGAAAGCATACAGAAAAATCTTCAAAAAGGAGAAGATTGGCAACATTGAAACCCTTTTGATAGGATCGGCAGCCGGTGCTATTTCAAGCAGTGCTACCTTTCCACTCGAAGTGGCTCGCAAACACATGCAAGTGGGAGCACTCAGTGGAAGGCAAGTATACAAGAATGTGATCCATGCCCTTGCAAGCATTCTTGAGCAAGAAGGTATCCAAGGATTGTATAAAGGGTTGGGACCTAGCTGCATGAAGTTGGTGCCAGCTGCAGGAATTTCATTCATGTGTTATGAAGCATGCAAGAGGATACTGGTAGAGGAAGATGATGAGGAGTAG 1185 0.4667 MGRRGIKLFDEERNGLFSISNFGSQWGGGGGVHGDPMNLAVIASISQMGMGFGVQQPNPSSSDSNSNSNSDSQHNGGMSMRIPCTELYIRYMQSEGKVKILGVPEEEVVEGVKKKKKGGVFKGLRIKVKNPSLRRLVSGAFAGAVSRTTVAPLETIRTHLMVGSSGNSTGEVFRNIMDTDGWKGLFRGNFVNVIRVAPSKAIELFAYDTVNKSLSPKPGEQPKVPIPASFIAGACAGRGVYDGLLDAFVKIIKEEGAGELYRGLTPSLIGVIPYSATNYFAYDTLRKAYRKIFKKEKIGNIETLLIGSAAGAISSSATFPLEVARKHMQVGALSGRQVYKNVIHALASILEQEGIQGLYKGLGPSCMKLVPAAGISFMCYEACKRILVEEDDEE 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g1138 394 ProSiteProfiles Solute carrier (Solcar) repeat profile. 220 288 IPR018108 -
Aed6g1138 394 Gene3D Mitochondrial carrier domain 240 394 IPR023395 -
Aed6g1138 394 Gene3D Mitochondrial carrier domain 112 239 IPR023395 -
Aed6g1138 394 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 30 237 - -
Aed6g1138 394 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 238 392 - -
Aed6g1138 394 ProSiteProfiles Solute carrier (Solcar) repeat profile. 298 386 IPR018108 -
Aed6g1138 394 PANTHER SOLUTE CARRIER FAMILY 25 30 237 - -
Aed6g1138 394 PANTHER SOLUTE CARRIER FAMILY 25 238 392 - -
Aed6g1138 394 Coils Coil 392 394 - -
Aed6g1138 394 MobiDBLite consensus disorder prediction 52 77 - -
Aed6g1138 394 PRINTS Mitochondrial carrier protein signature 148 162 IPR002067 GO:0055085
Aed6g1138 394 PRINTS Mitochondrial carrier protein signature 307 329 IPR002067 GO:0055085
Aed6g1138 394 PRINTS Mitochondrial carrier protein signature 135 148 IPR002067 GO:0055085
Aed6g1138 394 PRINTS Mitochondrial carrier protein signature 188 208 IPR002067 GO:0055085
Aed6g1138 394 Pfam Mitochondrial carrier protein 298 389 IPR018108 -
Aed6g1138 394 Pfam Mitochondrial carrier protein 241 291 IPR018108 -
Aed6g1138 394 Pfam Mitochondrial carrier protein 131 215 IPR018108 -
Aed6g1138 394 SUPERFAMILY Mitochondrial carrier 131 382 IPR023395 -
Aed6g1138 394 ProSiteProfiles Solute carrier (Solcar) repeat profile. 130 213 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g1138 Aed-Chr6 16052690 16056803 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g1138 295 394 Organic Solute Cotransporters AT4G32400 29.808 1.37e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g1138 K14684 - gmx:100816041 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1138 6 16052690 16056803 Aed6g1138 6 16052690 16056803 ECH
Aed6g1138 6 16052690 16056803 Aed4g1806 4 22286409 22290370 PCT