Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1806 ATGGGTAGAAGGGGGGGAATCCAACTATTCGATGACAAAAGAGATGTTTTTTTCTCTGTCACCAATTTGGGGTTCGAATCAAAAGATGGGTACCATCAGTTCGGAGGCTTGTTTGCCAGTGTTGGTCAAATGGGAATGGGGGTTGGCGTGCAACCTAACAATCCTTCTGATTCGCGTGGCAATGGTGGCTTGAAACTTCCCTTCAATGAACTGTTTCAATCGCAGGGGAAAGATGAGGTTGTTGTTGAAGAAGAGGGGAAGAATCATAAAAAAGGTGGTGTTTTTAAACTGAAGCTTAAGATCAGGAACCCTTCACTGAGGAGGTTGTTTAGTGGGGCAGTTGCTGGGGCTGTGTCTCGAACTGCTGTGGCGCCTTTGGAGACTATAAGGACTCTCTTGATGGTGGGGAGTACTGCCCATTCCACCACTGAGGTTTTCAACAATATTATGGAAACTGATGGCTGGAAAGGATTGTTTAGGGGTAATTTTGTTAATGTCATTCGGGTTGCGCCTAGCAAGGCCATTGAGCTATTAGCTTTTGATACAGTAAACAAGAACCTATCCCCAAAGCCTGGGGAGGAGTCCAAATTCCCAATTCCTGCATCATTGATTGCAGGTGCCTGTGCTGGAGTGAGTTCAACTATATGCACATATCCTCTTGAATTGGTCAAGACTCGATTAACGGTCCAGAGTGATGTTTATCATGGCCTGCTTCATGCATTCGTGAAAATAATTCGAGAAGAGGGTCCTGCTGAACTTTACAGTGGCCTTGTGGCTAGTCTTATCGGAGTTGTCCCATATGCTGCTGCCAATTACTATGCCTACGACACTTTAAAAAAAGCATACCGGAAAATGTTTAAACAAGAGAAAGTCGGCAACATTGAAACCCTTTTGATTGGTTCGGTAGCCGGTGCTGTGTCAAGTAGTGCAACTTTTCCACTCGAGGTGGCTCGCAAGCAGATGCAACTTGGAGCTCTCAGTGGAAGACAGGTGTACAAGAATGTGTTTCATGCCCTTGCATGCATATTTGAACAAGAAGGGATGAATGGTTTATATAGAGGGTTGGTACCTAGTTGCATAAAGTTGGTACCAGCCGCTGGAATCTCTTTCATGTGCTACGAAGCATGTAAGAGGATATTGCTAGAAAACGAAGAGGAGGATTAG 1164 0.4493 MGRRGGIQLFDDKRDVFFSVTNLGFESKDGYHQFGGLFASVGQMGMGVGVQPNNPSDSRGNGGLKLPFNELFQSQGKDEVVVEEEGKNHKKGGVFKLKLKIRNPSLRRLFSGAVAGAVSRTAVAPLETIRTLLMVGSTAHSTTEVFNNIMETDGWKGLFRGNFVNVIRVAPSKAIELLAFDTVNKNLSPKPGEESKFPIPASLIAGACAGVSSTICTYPLELVKTRLTVQSDVYHGLLHAFVKIIREEGPAELYSGLVASLIGVVPYAAANYYAYDTLKKAYRKMFKQEKVGNIETLLIGSVAGAVSSSATFPLEVARKQMQLGALSGRQVYKNVFHALACIFEQEGMNGLYRGLVPSCIKLVPAAGISFMCYEACKRILLENEEED 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1806 387 ProSiteProfiles Solute carrier (Solcar) repeat profile. 291 379 IPR018108 -
Aed4g1806 387 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 186 IPR018108 -
Aed4g1806 387 ProSiteProfiles Solute carrier (Solcar) repeat profile. 197 281 IPR018108 -
Aed4g1806 387 PANTHER ADENINE NUCLEOTIDE TRANSPORTER BT1, CHLOROPLASTIC/MITOCHONDRIAL 31 385 - -
Aed4g1806 387 PANTHER SOLUTE CARRIER FAMILY 25 31 385 - -
Aed4g1806 387 SUPERFAMILY Mitochondrial carrier 104 375 IPR023395 -
Aed4g1806 387 Gene3D Mitochondrial carrier domain 101 385 IPR023395 -
Aed4g1806 387 Pfam Mitochondrial carrier protein 105 187 IPR018108 -
Aed4g1806 387 Pfam Mitochondrial carrier protein 291 383 IPR018108 -
Aed4g1806 387 Pfam Mitochondrial carrier protein 198 285 IPR018108 -
Aed4g1806 387 PRINTS Mitochondrial carrier protein signature 300 322 IPR002067 GO:0055085
Aed4g1806 387 PRINTS Mitochondrial carrier protein signature 121 135 IPR002067 GO:0055085
Aed4g1806 387 PRINTS Mitochondrial carrier protein signature 108 121 IPR002067 GO:0055085
Aed4g1806 387 PRINTS Mitochondrial carrier protein signature 161 181 IPR002067 GO:0055085
Aed4g1806 387 PRINTS Mitochondrial carrier protein signature 212 230 IPR002067 GO:0055085
Aed4g1806 387 PRINTS Mitochondrial carrier protein signature 254 272 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1806 Aed-Chr4 22286409 22290370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1806 1 386 Organic Solute Cotransporters AT4G32400 65.394 2.02e-175 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1806 K14684 - gmx:100810035 650.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1806 4 22286409 22290370 Aed4g1806 4 22286409 22290370 ECH
Aed6g1138 6 16052690 16056803 Aed4g1806 4 22286409 22290370 PCT