Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0627 ATGGCGCCAATGTCGGCTCTCGCAAAGTACAAGCTAGTATTCTTGGGCGATCAGTCCGTTGGAAAAACCAGCATCATCACTCGCTTCATGTACGACAAATTCGACAACACTTATCAGGCTACGATCGGTATTGATTTTCTGTCAAAAACTATGTATCTTGAAGATCGAACTGTTCGACTGCAGTTGTGTTTTTTGTTCACTGTTCCTAAACACTTTGATGGACACTTTCTGATTATTCAGCATTCTTGTGATATAGGCCGTCAGACTTTTCTAAACACAGCAAAGTGGATTGAAGAGGTACGCAGTGAAAGAGGCAGCGATGTTATTGTTGTTCTTGTTGGGAACAAAACTGATCTTGTAGATAAAAGGCAAGTCTCTACAGAGGAAGGGGAAGCAAAGTCCCGAGAGCTAAACGTTATGTTTATTGAAGCTAGTGCAAAAGCTGGCTTTAATATAAAGGCCCTCTTTCGAAAAATTGCTGCTGCATTACCTGGAATGGAAACACTATCTACAACAAAACAGGAAGATATGGTCGATGTGAACCTGAGGTCTTCTGGTGGCCATGATTCCCAAGATCAGTCGGGTGGATGTGCTTGCTGA 600 0.425 MAPMSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLCFLFTVPKHFDGHFLIIQHSCDIGRQTFLNTAKWIEEVRSERGSDVIVVLVGNKTDLVDKRQVSTEEGEAKSRELNVMFIEASAKAGFNIKALFRKIAAALPGMETLSTTKQEDMVDVNLRSSGGHDSQDQSGGCAC 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0627 199 SMART rho_sub_3 12 165 IPR001806 GO:0003924|GO:0005525
Aed6g0627 199 CDD Rab6 10 163 - -
Aed6g0627 199 PANTHER DRAB5-RELATED 1 199 - -
Aed6g0627 199 SMART ras_sub_4 7 166 - -
Aed6g0627 199 Gene3D - 5 66 IPR027417 -
Aed6g0627 199 ProSiteProfiles small GTPase Ras family profile. 5 199 IPR001806 GO:0003924|GO:0005525
Aed6g0627 199 ProSiteProfiles small GTPase Rab1 family profile. 1 199 - -
Aed6g0627 199 Gene3D - 70 194 IPR027417 -
Aed6g0627 199 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 174 IPR027417 -
Aed6g0627 199 SMART rab_sub_5 10 166 - -
Aed6g0627 199 PANTHER GTP-BINDING PROTEIN RAB6 1 199 - -
Aed6g0627 199 Pfam Ras family 11 62 IPR001806 GO:0003924|GO:0005525
Aed6g0627 199 Pfam Ras family 86 162 IPR001806 GO:0003924|GO:0005525
Aed6g0627 199 PRINTS Transforming protein P21 ras signature 10 31 - -
Aed6g0627 199 PRINTS Transforming protein P21 ras signature 106 119 - -
Aed6g0627 199 PRINTS Transforming protein P21 ras signature 33 49 - -
Aed6g0627 199 PRINTS Transforming protein P21 ras signature 141 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0627 Aed-Chr6 5374444 5383054 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0627 K07893 - gmx:100790511 321.627
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0627 6 5374444 5383054 Aed6g0627 6 5374444 5383054 ECH
Aed11g1558 11 19717966 19721314 Aed6g0627 6 5374444 5383054 PCT