Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1558 ATGGCGCCTGTTTCAGCTTTAGCAAAGTACAAGCTCGTGTTCTTAGGTGACCAATCCGTTGGCAAAACCAGCATCATCACTCGCTTCATGTACGATAAATTCGACAACACCTATCAGGCTACAATTGGTATTGATTTTCTATCAAAAACTATGTATCTTGAAGATCGAACAGTTCGACTGCAGTTGTGTTGGGTTTTACTTAAGACTTTCCTAAATACAGCAAAGTGGATTGAAGAGGTGCGAACAGAGAGAGGCAGTGATGTTATTATTGTTCTTGTTGGGAACAAAACTGATCTTGTTGAAAAAAGACAAGTCTCTATAGAGGAAGGGGAAGCAAAAGCACGTGAGCTCAATGTCATGTTCATTGAAACTAGTGCTAAGGCTGGGTTTAATATCAAGGCTCTATTTCGAAAAATTGCTGCAGCATTACCTGGAATGGAAACACTATCTTCTGCAAAACAAGAAGACATGGTTGATGTAAACTTAAAGTCCACAAGTGGCAATGCTCAGTCTCAACCTCAGTCAAGTGGATGTGCTTGTTAA 543 0.4015 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLCWVLLKTFLNTAKWIEEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSAKQEDMVDVNLKSTSGNAQSQPQSSGCAC 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1558 180 SMART rho_sub_3 12 145 IPR001806 GO:0003924|GO:0005525
Aed11g1558 180 SMART rab_sub_5 10 146 - -
Aed11g1558 180 CDD Rab6 10 143 - -
Aed11g1558 180 Pfam Ras family 11 62 IPR001806 GO:0003924|GO:0005525
Aed11g1558 180 Pfam Ras family 68 142 IPR001806 GO:0003924|GO:0005525
Aed11g1558 180 SMART ras_sub_4 7 146 - -
Aed11g1558 180 ProSiteProfiles small GTPase Rab1 family profile. 5 180 - -
Aed11g1558 180 PANTHER GTP-BINDING PROTEIN RAB6 1 62 - -
Aed11g1558 180 PANTHER GTP-BINDING PROTEIN RAB6 68 180 - -
Aed11g1558 180 Gene3D - 67 177 IPR027417 -
Aed11g1558 180 Gene3D - 5 64 IPR027417 -
Aed11g1558 180 PANTHER DRAB5-RELATED 1 62 - -
Aed11g1558 180 PANTHER DRAB5-RELATED 68 180 - -
Aed11g1558 180 PRINTS Transforming protein P21 ras signature 33 49 - -
Aed11g1558 180 PRINTS Transforming protein P21 ras signature 10 31 - -
Aed11g1558 180 ProSiteProfiles small GTPase Ras family profile. 1 180 IPR001806 GO:0003924|GO:0005525
Aed11g1558 180 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 151 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1558 Aed-Chr11 19717966 19721314 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1558 K07893 - gmx:100794537 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1558 11 19717966 19721314 Aed11g1558 11 19717966 19721314 ECH
Aed11g1558 11 19717966 19721314 Aed6g0627 6 5374444 5383054 PCT