Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0622 ATGGCCGTTCAAGCTCAATATCCATCCAATGTCCTTTTTCTAAACAGCAGAAACGGGCAAGAGGGGCATGATTATTCGTTGCAACAACAACCCGGAGGAGTACTCTTGTACCAACCCCATATGTTATACAACAACAACGTCGACAATGGAAGTAACAACAATAGTTTTCGGAAGAGAGGAAGAGAAGACCCTGCTGTTGCCAACAACAACAACAACACAGCTTCTAATGTTATAAATCAATTCTCTTTACAATCTCAGCCTCCGCAACTTGTTCATCTCTCTCAGCTCCATAATCAACAGCAACAAAATGTGGTTTCCACTGGCCTACGCTTATCCTTCGATAACCAACACTTTCAACAACAACAACAAAGACTACAACTTCATCAAAATCAACAACAACAACATGGGTCGTCTCACTCTTCTTCTGCTTTCTTATCTCTGTTATCCCAAGGCTTGGGTTCTCAAATCAAACAACACCACGATGAGATTGATCAATTACTCCAAGCCCAGGGAGAGCAACTGAGGCGGGCAATGGCAGAGAAGAGGCAGAGGCATTACCGCGCGCTGCTGAGCGCGGCGGAGGAGGCGGTGGCGCGTCGGCTGAGAGAGAAAGAGGCGGAAGTGGAAATCGCCACGCGCAAGAACGCGGAGCTGGAAGCCCGCGCGGCCAAGCTGAGCGTGGAGGCCCAGGTGTGGCAGGCCAAGGCCCGGGCTCAGGAAGCAACCGCTGCCTCCCTCCAGGCCCAACTGCAGCAGACAATAATGTGTCACGGCGGAGAAGACCCGGGCGTGTCGTGCGCGGTGGAAGGGCAGGCGGAGGACGCAGAGTCGGCCTACATCGACCCCGACAGAGTCGTTGTCACGGCGGCGGCGGCGGCGGCGCGTCCAAAATGCAAAGGGTGCGTGAAGCGCGTGGCCTCGGTGGTTGTTCTGCCGTGTCGGCACTTGTGCATCTGTACAGAATGCGATGCGCATTTCCGAGCGTGCCCAGTTTGCCTCACCCCAAAGAATTCAACCGTTGAAGTTTTTCTTTCTTAA 1038 0.5289 MAVQAQYPSNVLFLNSRNGQEGHDYSLQQQPGGVLLYQPHMLYNNNVDNGSNNNSFRKRGREDPAVANNNNNTASNVINQFSLQSQPPQLVHLSQLHNQQQQNVVSTGLRLSFDNQHFQQQQQRLQLHQNQQQQHGSSHSSSAFLSLLSQGLGSQIKQHHDEIDQLLQAQGEQLRRAMAEKRQRHYRALLSAAEEAVARRLREKEAEVEIATRKNAELEARAAKLSVEAQVWQAKARAQEATAASLQAQLQQTIMCHGGEDPGVSCAVEGQAEDAESAYIDPDRVVVTAAAAAARPKCKGCVKRVASVVVLPCRHLCICTECDAHFRACPVCLTPKNSTVEVFLS 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0622 345 MobiDBLite consensus disorder prediction 120 142 - -
Aed6g0622 345 PIRSF SBP1_RNase_bind 1 345 IPR017066 -
Aed6g0622 345 Coils Coil 194 235 - -
Aed6g0622 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 345 IPR013083 -
Aed6g0622 345 Pfam Zinc finger, C3HC4 type (RING finger) 297 337 - -
Aed6g0622 345 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 1 344 - -
Aed6g0622 345 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 344 IPR017066 -
Aed6g0622 345 ProSiteProfiles Zinc finger RING-type profile. 298 332 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0622 Aed-Chr6 5309865 5312875 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed6g0622 298 334 Miscellaneous Gene Families AT2G21380 40.541 1.27e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0622 K19042 - gmx:100788924 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1566 11 19842508 19844639 Aed6g0622 6 5309865 5312875 PCT