Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0539 ATGAGGTGGGTCGGTGCCGTGGCCGTTGAGACAGAGAATATCTATATTGTTGAAGCAAACACAGCCTTGTTGGAGTTGCGAGCAAGAAACCGGAGCGTTGATTTTCTTCTTTCTATTTATCGATCGCCTTCACGAGGAAAGGAAAGATTGTCTGCAATCAGAGAGAAGAGAAGAGCTGAGGCTGCTAGGATTAGGGAGAAATACCCAGACCGTATCCCCGTGATTGTGGAGAAGGCAGAAAGAAGTGATATCCCAAGTATTGACAAGAAGAAGTACCTTGTCCCTGCTGATCTTACAGTTGGACAGTTTGTCTATGTTATCCGCAAAAGGATTAAATTAAGTGCAGAAAAGGCAATCTTTATCTTTGTAGACAACGTCCTTCCACCTACAGGAGCAATTATGTCTGCCATATATGATGAGAAGAAGGATGAGGATGGGTTTCTTTATGTTACTTACAGTGGGGAGAACACCTTCGGGGATCTGATTTCCCACTAG 495 0.4404 MRWVGAVAVETENIYIVEANTALLELRARNRSVDFLLSIYRSPSRGKERLSAIREKRRAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEKKDEDGFLYVTYSGENTFGDLISH 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0539 164 Pfam Autophagy protein Atg8 ubiquitin like 56 159 IPR004241 -
Aed6g0539 164 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 55 159 IPR004241 -
Aed6g0539 164 Gene3D - 41 159 - -
Aed6g0539 164 PANTHER AUTOPHAGY-RELATED PROTEIN 55 159 - -
Aed6g0539 164 CDD Ubl_ATG8 55 156 - -
Aed6g0539 164 SUPERFAMILY Ubiquitin-like 51 159 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0539 Aed-Chr6 4581249 4584794 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0539 K08341 - gmx:100818620 211.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1632 11 20262179 20265614 Aed6g0539 6 4581249 4584794 PCT