Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed6g0447 ATGGCTCTCGTGACTCGAACCGGAACCACGTGGCGCCTCCCTCAGCGGCTAGTTTCGGCGTCCGCGTCCGCGTCCCTCCACAGCGGTTCCTCCGGCCCCACCGCTCCCACGAGTTACTGTGCGCCGTCTCCGTCAGCGGCGGCGAGGGCGAGTGCCTCCCCTGTGGGGCTGTCGAAGCCGGGGGAGTTCGTGATCTCGAAGGTGGACGCGCTCCTGAACTGGGCCCGCACAGGGTCCCTCTGGCCCATGACGTTTGGGCTGGCCTGCTGCGCTGTGGAGATGATGCACACGGGCGCGGCCCGCTACGATCTGGACCGCTTCGGAATCATCTTCAGGCCCAGCCCACGCCAGTCCGATTGCATGATCGTTGCAGGCACACTGACAAACAAGATGGCCCCTGCTCTTCGCAAGGTTTATGATCAAATGCCTGAGCCAAGATGGGTGCTCTCAATGGGAAGTTGTGCGAATGGAGGAGGATACTATCACTATTCTTACGCTGTTGTTAGAGGATGTGACAGAATTGTTCCTGTTGACATATACATTCCGGGTTGTCCTCCAACTGCTGAGGCTTTGCTATATGGCCTCCTTCAGCTGCAGAAGAAGATCAATAGGCGCAAGGACTTCCTCTGGTGGTGGACCAGGTGA 645 0.5938 MALVTRTGTTWRLPQRLVSASASASLHSGSSGPTAPTSYCAPSPSAAARASASPVGLSKPGEFVISKVDALLNWARTGSLWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVLSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYIPGCPPTAEALLYGLLQLQKKINRRKDFLWWWTR 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed6g0447 214 Pfam NADH ubiquinone oxidoreductase, 20 Kd subunit 89 198 IPR006137 GO:0051536
Aed6g0447 214 SUPERFAMILY HydA/Nqo6-like 62 211 - -
Aed6g0447 214 PANTHER NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 7, MITOCHONDRIAL 20 214 - -
Aed6g0447 214 PANTHER NADH DEHYDROGENASE 20 214 - -
Aed6g0447 214 TIGRFAM nuoB_fam: NADH-quinone oxidoreductase, B subunit 63 204 IPR006138 GO:0008137|GO:0048038|GO:0051539
Aed6g0447 214 ProSitePatterns Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 170 186 IPR006138 GO:0008137|GO:0048038|GO:0051539
Aed6g0447 214 Gene3D - 60 214 - -
Aed6g0447 214 Hamap NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 45 203 IPR006138 GO:0008137|GO:0048038|GO:0051539
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed6g0447 Aed-Chr6 3915157 3918503 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed6g0447 K03940 - gmx:100814025 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g0447 6 3915157 3918503 Aed6g0447 6 3915157 3918503 ECH
Aed6g0447 6 3915157 3918503 Aed4g1632 4 21021105 21023748 PCT