Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2346 ATGACAAGTTTTAACACTATGGATCAAGAATTGGAGGTTGATGATGGTTTGCAAGTGCAACATCAAAGCGAAGATGATGATGGATATTCACTAAACCCTGAATTCCCCAAAATATTAAAACCACCCCAAGAAATACACACTGGCTATTCCCACCTCCCACCTCCAGAACAAGATAAGAATATCGTTGAAGCAAGGGAACATCTGCATCCAACTCTATTTTCTGATTGTGCTGCTGGTCCCATTGTTGAAGAACTAACAGTGAAAAGTTACAATGGTTCTAGGATAGATATTGGTACTTTGAATAATCCTGGGCCTTTGCTTAATGGCCGGAGTCGATGGCAGCATATTTCTCAGCCGGCTGGTGATTCAGGTATGGGAAATGATTGCATAATAGCTAGAAAGAGTGTTCAAGCTACATCTAGTGCTTTGGAGGATATTGGGTCCACGTCTTTCCGAGAGATATTAGCTAGAAAATCAGTGAATGATGATCAGGGCAATGTCATGCAGCACTTGTCCACTGATGTGCATACAGCTGAACATACAGAGGATGAAGATGATGCTCATGAAGGAATACAAACAAAAATTATACACAGATCGGGATTTTCCGATATTAGAAGTGCATTGAAGGGAAAGGGTGTTGTATGTAAAGGTCCATCTTCTGATGGCTTATATGTTGAATCTAGAGATCAGAACCTAATTAAGTTTGGCATTGACACTCAGATGGATTCTAATGCTTTGCTGAGCTCTGGTTTAAAGACTGCAAAGTCTCCTCATAATGCTACAGGGCCAGGATCTGGTGGGTCTGACACTGATGGTGTGACTTTGAGAGAATGGTTGAAATCTAGGCACCACAAAGAGAGCAAAACAGATCATTTAATTATATTTAGAAAAATTGTGGATTTGGTTGATGGTTCTCACTCTGAGGGAGTTGCAATGCACAATCTGTACCCTTCTTGTATTGAATTGTTACCATCAAACAAGGTTTTGCACCCTGGGTTGCCTACTCAGAAACAGACATTAAACAGTGTTGCAAATTCTGAAGTTCTTCAGCTAGAGAATTCTTTTATTAGGAAAAGGCTGTCAGAGAAGGTAATATCTCCCTCTCTTGATTTGCTGTCGAAGAAACAGAAATTCAATGAAAATGCTAGAGTTGCTGGTGATTGGAGTCAATGCCCTCCAAGGACTGAGTTGTATCTTCAAATTGCCAATGGTATTAAAGCCAATGCAGTGGGATCACAAGATTATTGCAATGAACACAAGGAGGATATCCAATTTTCTAAACATGATATTCATAGAATGTCTCGCATCCCTCACATATCTAATGCAGGTCAATTGCAATTGACTTCTTTAAATGAAAGATTGGAAGATAAATGGTATGCAAGTCCTGAGGGTGGTTGCACAACATCATCAAATGTCTACTGTCTGGGAGTCCTTTTTTTTGAGTTACTTAATCATTTTGACTCAGAAAGAGCACATATTGCTGCAATGTCTGATCTTCGTAGTAGGATTCTTCCTTCAGTTTTCCTATCAGTGTATCCTATGGAAGCCAGATTTTGCCTTTGGATGATGCATCCTGAACCATCATCACGTCCAACAATAAGGGAGATCCTACAATCTGAAGTGATTAATGGGATGGTGTACTGTGAGGAATTATCATCAAGCCTTAACCAAGATGTTGCAAAATCAGAAAAGCTATTGCATTTCCTCAGCTCACTACAAGAGCAGAAGCACATGGATGCCAACAAATTGGCAGAAGAAATCAGATGCTTAGAATCAGATATAGAAGAGTTGGAGAGGAGACATGACTTGAGAAAATCTTTGCTTCCCTCAAACTTGCAGAACAACTCCTCTTGTCAAATAGAGAATGCGTTTCTTCTCAAAGAATCTTCAAGTTCAGAAACATTACCACCAGTATCCACAATTTCTAATGGAAGTGAACTGAGATTGATGAAAAATATACTCCCACTTGAAAGTGCTTACTTTTCCATGAGATCTAGAGTTAAGCTTCCCGAGACAGATACTGCAACTCACACAAATAAAGATATACTGGGAAATCGTGACAACTGGTGTGTAGCTCAAAAAGACATGGAACAACATAAAACGACAGATACTTTAGGATATATTTTTGATGGTTTGTGCAAGTACGCACGTTATAGCAAGTTTGAAGAGCGGGGCATAATAAGAAATACTGATTTTAACAATTATGCAAATGAAATCTACTCTCTGAGTTTTGATAGGGATGAAGACTACTTTGCTGCTGCTGGGATGTCAAATCAAATTAAAATTTTTGAGTTCAATGCACTTTTAAATGACTCTGTTGACATCCATTATCCTGTAGTTGAGATGTCAAACAGATCAAGTTTCAGTTGTGTTTGCTGGAATAATTATATCCAGAACTATCTTGCCTCCACAGACTATGATGGTGCAGTTAAGCTATGGGATGCTAATACAGGCCAAGGGTTTTCTCTATTCACCGAACATGAAAACAGGGCTTGGTCTGTTGATTTCTCTTTGGGTTGGCCTACTATATTTGCCAGTGGCAGTGATGATTGTTCTGTGAAACTGTGGAATATGAAGCAGAAAAAAAGTTTAGACACAATCAGGCATGTTGCTAATGTCTGTTGTGTTCAATTCTCTACTCATTACCCTCATTTGCTGGCCTTTGCATCTGTTAATGGCAAAGCTTATTGCTATGATCTTCGCAATCTTAGAAGCCCTTGGTGTGTGTTGGCTGGCCATAGTAACACTGTAAGCTATGTCAAATTCTTGGACTCTGAAACACTTGTTTCTGCTTCAACTGATAATATGTTGAAGATCTGGGATCTCAATAAAACCTCTCCTGTGGGTCCATCAACTAATGATTGCAGCTTAACCATGTCAGGACATGCAAATGAGAAGTATTTTGTGGGTTTATCAGTTGCTGATGGATATATAGCATGTGGTTCAGAAACAAATGAGGTTTATGCCTACTATAAATCTCTTCCCATGCCAGTCACTTCATACAGGTTTGAGCCCATTGATCCTATTTCTGGTATAGAGACCACCGATGTCAATCGTCCGTTTGTTTCAAGTGTGTGCTGGAGAAGGAAATCAGACATGGTTATTGCAGCCAATTCAAGAGGATGTATTAAAGTTCTACAGATGGTTTGA 3150 0.3933 MTSFNTMDQELEVDDGLQVQHQSEDDDGYSLNPEFPKILKPPQEIHTGYSHLPPPEQDKNIVEAREHLHPTLFSDCAAGPIVEELTVKSYNGSRIDIGTLNNPGPLLNGRSRWQHISQPAGDSGMGNDCIIARKSVQATSSALEDIGSTSFREILARKSVNDDQGNVMQHLSTDVHTAEHTEDEDDAHEGIQTKIIHRSGFSDIRSALKGKGVVCKGPSSDGLYVESRDQNLIKFGIDTQMDSNALLSSGLKTAKSPHNATGPGSGGSDTDGVTLREWLKSRHHKESKTDHLIIFRKIVDLVDGSHSEGVAMHNLYPSCIELLPSNKVLHPGLPTQKQTLNSVANSEVLQLENSFIRKRLSEKVISPSLDLLSKKQKFNENARVAGDWSQCPPRTELYLQIANGIKANAVGSQDYCNEHKEDIQFSKHDIHRMSRIPHISNAGQLQLTSLNERLEDKWYASPEGGCTTSSNVYCLGVLFFELLNHFDSERAHIAAMSDLRSRILPSVFLSVYPMEARFCLWMMHPEPSSRPTIREILQSEVINGMVYCEELSSSLNQDVAKSEKLLHFLSSLQEQKHMDANKLAEEIRCLESDIEELERRHDLRKSLLPSNLQNNSSCQIENAFLLKESSSSETLPPVSTISNGSELRLMKNILPLESAYFSMRSRVKLPETDTATHTNKDILGNRDNWCVAQKDMEQHKTTDTLGYIFDGLCKYARYSKFEERGIIRNTDFNNYANEIYSLSFDRDEDYFAAAGMSNQIKIFEFNALLNDSVDIHYPVVEMSNRSSFSCVCWNNYIQNYLASTDYDGAVKLWDANTGQGFSLFTEHENRAWSVDFSLGWPTIFASGSDDCSVKLWNMKQKKSLDTIRHVANVCCVQFSTHYPHLLAFASVNGKAYCYDLRNLRSPWCVLAGHSNTVSYVKFLDSETLVSASTDNMLKIWDLNKTSPVGPSTNDCSLTMSGHANEKYFVGLSVADGYIACGSETNEVYAYYKSLPMPVTSYRFEPIDPISGIETTDVNRPFVSSVCWRRKSDMVIAANSRGCIKVLQMV 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2346 1049 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 910 943 - -
Aed5g2346 1049 PANTHER PROTEIN SPA1-RELATED 2 75 1049 - -
Aed5g2346 1049 SMART WD40_4 817 857 IPR001680 GO:0005515
Aed5g2346 1049 SMART WD40_4 720 764 IPR001680 GO:0005515
Aed5g2346 1049 SMART WD40_4 775 814 IPR001680 GO:0005515
Aed5g2346 1049 SMART WD40_4 860 899 IPR001680 GO:0005515
Aed5g2346 1049 SMART WD40_4 952 991 IPR001680 GO:0005515
Aed5g2346 1049 SMART WD40_4 903 941 IPR001680 GO:0005515
Aed5g2346 1049 Coils Coil 580 600 - -
Aed5g2346 1049 Gene3D - 709 1049 IPR015943 GO:0005515
Aed5g2346 1049 MobiDBLite consensus disorder prediction 252 272 - -
Aed5g2346 1049 ProSiteProfiles Trp-Asp (WD) repeats profile. 824 866 IPR001680 GO:0005515
Aed5g2346 1049 MobiDBLite consensus disorder prediction 14 31 - -
Aed5g2346 1049 ProSiteProfiles Trp-Asp (WD) repeats profile. 910 950 IPR001680 GO:0005515
Aed5g2346 1049 SUPERFAMILY WD40 repeat-like 733 1047 IPR036322 GO:0005515
Aed5g2346 1049 SUPERFAMILY Protein kinase-like (PK-like) 450 548 IPR011009 -
Aed5g2346 1049 ProSitePatterns Trp-Asp (WD) repeats signature. 928 942 IPR019775 -
Aed5g2346 1049 ProSitePatterns Trp-Asp (WD) repeats signature. 801 815 IPR019775 -
Aed5g2346 1049 PRINTS G protein beta WD-40 repeat signature 928 942 IPR020472 -
Aed5g2346 1049 PRINTS G protein beta WD-40 repeat signature 801 815 IPR020472 -
Aed5g2346 1049 PRINTS G protein beta WD-40 repeat signature 844 858 IPR020472 -
Aed5g2346 1049 MobiDBLite consensus disorder prediction 1 36 - -
Aed5g2346 1049 MobiDBLite consensus disorder prediction 252 268 - -
Aed5g2346 1049 PANTHER PROTEIN SPA1-RELATED 2 75 1049 IPR044630 GO:0009640
Aed5g2346 1049 ProSiteProfiles Trp-Asp (WD) repeats profile. 781 823 IPR001680 GO:0005515
Aed5g2346 1049 Gene3D Transferase(Phosphotransferase) domain 1 405 550 - -
Aed5g2346 1049 Pfam WD domain, G-beta repeat 909 941 IPR001680 GO:0005515
Aed5g2346 1049 Pfam WD domain, G-beta repeat 824 857 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2346 Aed-Chr5 25071452 25077998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2346 782 942 Miscellaneous Gene Families AT5G08390 23.636 9.02e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2346 K16240 - gmx:100776980 1673.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1766 11 21104564 21113263 Aed5g2346 5 25071452 25077998 PCT