Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2317 ATGGCTGTGGACCAAACTCAATTGTTGTCTAAGATGGCCATCGGAGATGGACATAGTGAAGCATCCCCTTACTTTGATGGATGGAAGGCTTATGATGAAAACCCCTTTCACCCCACTCACAATCCTAACGGGGTTATCCAAATGGGTCTTGCTGAGAATCAGCTTACTTCTGACTTGGTTGAAGATTGGACACTGAATAACCCTGAGGCTTCCATTTGCACTCCAGAAGGAATTAATGATTTCAGGGCCATAGCTAACTTTCAGGATTATCATGGTCTACCCGAATTCAGAAATGCCGTGGCTAAATTCATGGGTAGAACAAGAGGAAACAGAGTCACGTTTGACTCTGATCGTATTGTCATGAGCGGTGGAGCAACCGGAGCACACGAAGTCACTACCTTTTGTTTGGCTGACCCCGGTGACGCTTTTTTGGTGCCCATTCCCTATTATCCAGGTTTTGACCGGGATTTGAGGTGGAGAACAGGAGTTAACCTTGTTCCAGTTATGTGCGATAGCTCAAACAATTTCAAGTTGACAAGGCAAGCATTGGAAGATGCGTATGAGAAAGCCAAAGAGGATAACATAAGGGTAAAGGGATTGCTCATCACCAATCCATCAAACCCATTAGGCACAGTCATGGACAGAAACACTCTAAGAACCGTTGTGAGCTTCATCAATCAGAAGCGTATCCACCTTGTTTCTGATGAAATATACTCAGCAACAGTTTTCAGCCACCCCACTTTTATAAGCATTGCTGAGATATTGGAGGAAGACACAGACATTGAGTGTGACCGCGACCTCGTTCACATTGTTTATAGTCTTTCAAAGGATATGGGGTTCCCTGGCTTTAGAGTTGGCATCATATACTCTTACAATGATGCTGTTGTCCATTGTGCACGCAAAATGTCAAGCTTTGGATTAGTGTCAACACAGACTCAGTATCTTTTAGCAGCAATGCTAAATGATGATGAGTTTGTGGAAAGGTTTCTGGCAGAGAGTGGAAAGAGGTTGGCACAAAGGTATAGAGTTTTCACTTGTGGGTTGGCCAAGGTTGGCATAAAGTGCTTGCAAAGCAATGCTGGTCTCTTTGTGTGGATGGACTTGAGGCAACTTCTAAAGAAGCCAACTTTTGACTCTGAAATGGAGCTTTGGAGAGTGATCATTCATGAAGTTAAGATTAATGTTTCACCTGGCTCTTCTTTCCATTGCACTGAGCCAGGGTGGTTTAGGGTGTGCTATGCCAACATGGATGATATGGCTGTGCAACTTGCTTTGCAAAGAATTCGCACCTTTGTGATTCAGAACAAGGAGGTCATGGTGCCTAACAAGAAACATTGTTGGCACAGTAACTTGAGGCTGAGCCTCAAAACCAGAAGGTTTGATCATGATATCATGATGTCACCTCATTCCCCCATACCTCAGTCACCCCTAGTCAAAGCCACAATTTGA 1449 0.441 MAVDQTQLLSKMAIGDGHSEASPYFDGWKAYDENPFHPTHNPNGVIQMGLAENQLTSDLVEDWTLNNPEASICTPEGINDFRAIANFQDYHGLPEFRNAVAKFMGRTRGNRVTFDSDRIVMSGGATGAHEVTTFCLADPGDAFLVPIPYYPGFDRDLRWRTGVNLVPVMCDSSNNFKLTRQALEDAYEKAKEDNIRVKGLLITNPSNPLGTVMDRNTLRTVVSFINQKRIHLVSDEIYSATVFSHPTFISIAEILEEDTDIECDRDLVHIVYSLSKDMGFPGFRVGIIYSYNDAVVHCARKMSSFGLVSTQTQYLLAAMLNDDEFVERFLAESGKRLAQRYRVFTCGLAKVGIKCLQSNAGLFVWMDLRQLLKKPTFDSEMELWRVIIHEVKINVSPGSSFHCTEPGWFRVCYANMDDMAVQLALQRIRTFVIQNKEVMVPNKKHCWHSNLRLSLKTRRFDHDIMMSPHSPIPQSPLVKATI 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2317 482 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6 4 443 - -
Aed5g2317 482 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 273 286 IPR004838 GO:0003824|GO:0009058|GO:0030170
Aed5g2317 482 Gene3D - 68 322 IPR015421 GO:0003824
Aed5g2317 482 CDD AAT_like 86 429 - -
Aed5g2317 482 Pfam Aminotransferase class I and II 46 428 IPR004839 GO:0009058|GO:0030170
Aed5g2317 482 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 4 443 - -
Aed5g2317 482 SUPERFAMILY PLP-dependent transferases 21 431 IPR015424 -
Aed5g2317 482 Coils Coil 173 193 - -
Aed5g2317 482 Gene3D Aspartate Aminotransferase, domain 1 34 427 IPR015422 GO:0003824
Aed5g2317 482 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 230 253 - -
Aed5g2317 482 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 267 291 - -
Aed5g2317 482 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 140 161 - -
Aed5g2317 482 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 194 218 - -
Aed5g2317 482 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 48 74 - -
Aed5g2317 482 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 118 138 - -
Aed5g2317 482 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 299 322 - -
Aed5g2317 482 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 81 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2317 Aed-Chr5 24864321 24866770 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2317 K20772 - gmx:100037458 934.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1738 11 20941984 20944252 Aed5g2317 5 24864321 24866770 PCT