Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed11g1738 ATGAGTGTTAACGAACCCCAATTATTATCTAAGATTGCCACCGGCGATGGACATGGTGAGAACACCCCATACTTTGATGGGTGGAAAGCTTATGAGGATGATCCCTTTCATCCCATCAAAAATCCTAATGGGGTTATCCAGATGGGTCTTGCAGAAAATCAGCTTGCTTCAGATTTGGTTCAGCAATGGTTAACGAATAATCCTAGGGCTTCCATTTGCACTCCTGAAGGAGTGCATGATTTCAAGGCCATAGCTAACTTTCAAGACTACCATGGTCTGCCGGAATTCAGAAAAGCTGTGGCTAAATTCATGGCAAGAACGAGAGGAAATAAAGTTACATTTGACCCTGATCGTATTGTTATGAGTGGTGGAGCAACTGGAGCACATGAGGTCACTATTTTTTGTTTGGCGGATCCTGGCGATGCATTTTTGGTCCCCACACCTTATTATGCAGGATTCGACAGGGATTTGAAGTGGAGAACGGGCGTTGAACTTGTTCCAGTTAAATGTGAAAGCTATAATGATTTCAAATTAACAAGGAAAGCGTTGGAAGAAGCGTACGAGAAAGCCAAAGAGGACAACATCCGAATAAAGGGGTTGCTTATTACCAACCCGTCAAACCCATTGGGAACTATGATGGACCGAGAAACTCTAAGAACAGTGGTGAGTTTCATCAATGAAAAACACATCCACCTAGTTAGCGACGAAATATACGCGGGTACAGTTTTTAGCCACCCTGGCGGATTCACGAGCATCGCAGAGGTAATAGAGCAAGACACCGAGCGTGACCTTATCCACATTGTTTATAGTCTTTCAAAGGATATGGGGTTCCCTGGGTTTAGAGTTGGCATCATATACTCTTACAACGACGCGGTGGTCAATTGCGCTCGCAAAATGTCTAGCTTTGGATTAGTATCCACGCAGACCCAATACCTTATTGCATCAATGCTTTCTGATGACGAGTTTGTGGAAGGGTTCCTTGAAGAGAGTGCAAAAAGGCTTGCGAAAAGGTATGGGGTATTCTGTAGGGGACTTGTGCAAGTTGGGATAAAGTGCTTGGCGAGTAACGCTGGTCTGTTTCTGTGGATGGATTTGCGTGGGCTTTTGAACAAGTCAAGTTTTGAGGCGGAAATGGAGCTGTGGAAAGTGATAATTGAGCAAGTGAAGATAAATATCTCACCTGGCTCTTCTTTTCATTGTTGTGAGCCAGGATGGTTCAGGGTTTGCTATGCCAACATGGATGATAGAGCCGTGGAAGTTTCTCTGTCGAGAATGCGCACCTTCGTCAATCAGAAGAACACCGATGAAACTGAAGCCAAGAAGAGAAAGTTGAGGCTAAGCTTCTCATTCAGAAAGTTGGATCATGACTACTTGCTCTCACCTCACTCCCCTTTTCCTCAATCACCTATGCTCAAAGCCTCCACTTGA 1428 0.4454 MSVNEPQLLSKIATGDGHGENTPYFDGWKAYEDDPFHPIKNPNGVIQMGLAENQLASDLVQQWLTNNPRASICTPEGVHDFKAIANFQDYHGLPEFRKAVAKFMARTRGNKVTFDPDRIVMSGGATGAHEVTIFCLADPGDAFLVPTPYYAGFDRDLKWRTGVELVPVKCESYNDFKLTRKALEEAYEKAKEDNIRIKGLLITNPSNPLGTMMDRETLRTVVSFINEKHIHLVSDEIYAGTVFSHPGGFTSIAEVIEQDTERDLIHIVYSLSKDMGFPGFRVGIIYSYNDAVVNCARKMSSFGLVSTQTQYLIASMLSDDEFVEGFLEESAKRLAKRYGVFCRGLVQVGIKCLASNAGLFLWMDLRGLLNKSSFEAEMELWKVIIEQVKINISPGSSFHCCEPGWFRVCYANMDDRAVEVSLSRMRTFVNQKNTDETEAKKRKLRLSFSFRKLDHDYLLSPHSPFPQSPMLKAST 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed11g1738 475 Coils Coil 173 200 - -
Aed11g1738 475 CDD AAT_like 86 416 - -
Aed11g1738 475 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 81 97 - -
Aed11g1738 475 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 118 138 - -
Aed11g1738 475 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 296 319 - -
Aed11g1738 475 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 230 253 - -
Aed11g1738 475 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 48 74 - -
Aed11g1738 475 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 194 218 - -
Aed11g1738 475 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 140 161 - -
Aed11g1738 475 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 264 288 - -
Aed11g1738 475 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6 3 439 - -
Aed11g1738 475 Gene3D Aspartate Aminotransferase, domain 1 34 424 IPR015422 GO:0003824
Aed11g1738 475 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 3 439 - -
Aed11g1738 475 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 270 283 IPR004838 GO:0003824|GO:0009058|GO:0030170
Aed11g1738 475 Gene3D - 68 319 IPR015421 GO:0003824
Aed11g1738 475 SUPERFAMILY PLP-dependent transferases 20 430 IPR015424 -
Aed11g1738 475 Pfam Aminotransferase class I and II 46 422 IPR004839 GO:0009058|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed11g1738 Aed-Chr11 20941984 20944252 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed11g1738 K20772 - gmx:100793020 865.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed11g1738 11 20941984 20944252 Aed11g1738 11 20941984 20944252 ECH
Aed11g1738 11 20941984 20944252 Aed5g2317 5 24864321 24866770 PCT