Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2217 ATGGCTAGGGTTTTAGCTCAGTCTGTTGGCATACCTGGTCTAATGAGTGGGCAAAGGCATGGGCAGCATAAGGGATCAGGAAAATCGAAAAGATCTGTCAAAATGATGAGTACATTACGAACTCCTGCTTTAAGAATGTCGAGTTTCTCTGGATTACGTACTCTTAATCCTTTGGATTCTCTGTCGAGGAGACCACGGTACACTTTTCCATTGACTACAACTTATAGGCGCGAAAGAGCTAAAAGATTTGTACCTAAAGCTATGTTTGAGCGTTTCACAGAGAAGGCAATCAAAGTAATTATGCTAGCCCAGGAGGAAGCAAGAAGACTCGGGCACAATTTCGTTGGAACGGAGCAGATTCTATTGGGTCTTATTGGTGAAGGCACTGGCATTGCTGCTAAGGTTCTCAAGTCAATGGGAATTAACCTTAAGGATGCTCGTGTGGAAGTCGAGAAGATTATTGGAAGGGGTAGTGGATTTGTTGCTGTTGAGATTCCATTTACTCCTCGTGCAAAGCGTGTTTTGGAACTCTCATTGGAGGAAGCTCGCCAACTTGGTCACAATTATATTGGATCCGAGCACTTGCTTCTTGGTCTTCTTCGAGAGGGTGAGGGTGTAGCAGCACGTGTTATCCGCATGGTTGGTGAGGGTGCTGACAGTGTTGGTGCTACTGTTGGTCCTGGAAGTAGTAATAACAATAAGATGCCAACGTTGGAGGAATATGGCACCAATTTGACCAAGCTAGCTGAAGAGGGAAAATTGGATCCTGTTGTGGGTAGGCAGCCACAGATTGAGCGTGTAACTCAAATTTTGGGTCGTCGTACTAAAAATAATCCTTGTCTTATTGGAGAACCTGGTGTTGGCAAGACAGCTATTGCGGAAGGCCTTGCCCAAAGGATTGCAAATGGTGATGTTCCTGAAACCATAGAGGGAAAGAAGGTTATAACCCTTGATATGGGTCTACTGGTAGCTGGAACTAAATATCGTGGAGAATTTGAGGAAAGATTGAAGAAACTAATGGAAGAAATCAAACAAAGTGATGAGATAATTCTTTTTATTGATGAAGTGCACACTCTAATTGGAGCTGGTGCAGCTGAGGGGGCAATTGATGCTGCAAACATATTAAAACCAGCTCTTGCCAGAGGTGAACTACAGTGTATAGGAGCCACAACACTAGATGAATATAGGAAGCATATTGAAAAGGATCCAGCTCTGGAGAGGCGATTCCAGCCAGTTAAAGTGCCAGAGCCAACTGTGGATGAAACCATACAAATACTGAAAGGACTTAGAGAACGTTATGAAATTCACCACAAACTCCGTTATACAGATGATGCTCTTGTAGCTGCTGCACAGCTTTCACACCAATATATTAGTGATCGATTTTTGCCTGACAAAGCTATAGATTTAATTGATGAAGCTGGTTCTCGAGTCCGGCTTCAACATGCACAGTTACCTGAAGAAGCAAGAGAGCTTGACAAGGAGGTCAGGCAGATTGTGAAAGAGAAAGATGAAGCTGTTCGCAATCAAGACTTTGAAAAGGCTGGAGAGCTACGGGATAGAGAAATGGATCTTAAGACACAGATATCCACACTTATAGAAAAAGGCAAGGAGATGAGCAAAGCAGAAAGTGAGGCAGGAGATGAAGGTCCCACGGTGACTGAAGTTGACATACAACATATTGTCTCCTCCTGGACTGGTATTCCTGTGGAGAAAGTCTCGACTGATGAATCTGATCGCCTCCTCAAGATGGAAGAGACTTTACACAAGCGAGTCATAGGTCAAGATGAAGCAGTGAAAGCCATTAGCAGGGCCATCCGTCGAGCCAGGGTTGGACTGAAGAACCCTAATCGTCCAATTGCCAGCTTCATCTTTTCTGGGCCAACTGGTGTGGGGAAGTCTGAGTTGGCAAAAGCATTGGCTACATACTACTTTGGTTCTGAAGAAGCCATGATTCGGCTTGACATGAGTGAATTCATGGAAAGGCACACAGTCTCTAAACTCATTGGTTCACCTCCTGGATATGTTGGTTACACAGAGGGTGGTCAACTGACTGAGGCAGTTCGGCGTCGTCCCTATACTGTTGTACTATTTGATGAGATTGAGAAAGCCCATCCTGATGTATTCAACATGATGCTTCAGATCCTGGAAGATGGAAGATTAACAGACAGCAAGGGAAGAACTGTGGACTTCAAGAACACACTTCTTATAATGACATCAAATGTTGGAAGCAGTGTGATTGAGAAAGGAGGCCGCAAAATAGGATTTGACCTTGATTATGATGAGAAGGATAGCAGTTACAATCGAATCAAGAGCTTGGTGACTGAGGAACTGAAGCAATACTTTAGGCCAGAGTTCTTGAATAGGTTGGATGAAATGATCGTTTTCAGGCAACTCACAAAATTGGAGGTAAAGGAGATAGCTGACATAATGCTGAAGGAGGTGCTTGAGAGACTGAAAACCAAAGAGATCGATCTCTCAGTCACAGAAAGATTTAGGGAGAGGGTGGTTGACGAAGGATATAATCCTAGTTATGGGGCTAGGCCTCTAAGAAGAGCCATAATGCGACTTTTGGAGGATAGCATGGCTGAGAAGATGCTTGCTAGAGAGATTAAAGAGGGTGATTCAGTTATAGTTGATGCTGATTCTGATGGTAATGTGATTGTGCTCAACGGTGGTAGTGGTGCCCCAGAGTCAGAGTCAGTTGCAGAAGCTCTTCCAGTGTAA 2724 0.4405 MARVLAQSVGIPGLMSGQRHGQHKGSGKSKRSVKMMSTLRTPALRMSSFSGLRTLNPLDSLSRRPRYTFPLTTTYRRERAKRFVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVIRMVGEGADSVGATVGPGSSNNNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDDALVAAAQLSHQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEARELDKEVRQIVKEKDEAVRNQDFEKAGELRDREMDLKTQISTLIEKGKEMSKAESEAGDEGPTVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALATYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVLERLKTKEIDLSVTERFRERVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDADSDGNVIVLNGGSGAPESESVAEALPV 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2217 907 ProSitePatterns Chaperonins clpA/B signature 1. 370 382 IPR018368 GO:0005524
Aed5g2217 907 PANTHER ATP-DEPENDENT CLP PROTEASE 73 902 - -
Aed5g2217 907 SMART AAA_5 275 415 IPR003593 -
Aed5g2217 907 SMART AAA_5 618 799 IPR003593 -
Aed5g2217 907 Pfam Clp amino terminal domain, pathogenicity island component 179 217 IPR004176 -
Aed5g2217 907 Pfam Clp amino terminal domain, pathogenicity island component 103 155 IPR004176 -
Aed5g2217 907 Gene3D - 420 564 - -
Aed5g2217 907 Gene3D - 228 418 IPR027417 -
Aed5g2217 907 Coils Coil 329 349 - -
Aed5g2217 907 Pfam C-terminal, D2-small domain, of ClpB protein 798 878 IPR019489 -
Aed5g2217 907 CDD AAA 592 740 - -
Aed5g2217 907 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 514 IPR027417 -
Aed5g2217 907 MobiDBLite consensus disorder prediction 9 33 - -
Aed5g2217 907 Pfam ATPase family associated with various cellular activities (AAA) 280 396 IPR003959 GO:0005524|GO:0016887
Aed5g2217 907 Gene3D - 88 226 IPR036628 -
Aed5g2217 907 Coils Coil 488 508 - -
Aed5g2217 907 Pfam AAA lid domain 418 519 IPR041546 -
Aed5g2217 907 PANTHER CHAPERONE PROTEIN CLPC1, CHLOROPLASTIC 73 902 - -
Aed5g2217 907 SMART ClpB_D2_small_2 798 888 IPR019489 -
Aed5g2217 907 CDD AAA 258 410 - -
Aed5g2217 907 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 696 714 IPR001270 GO:0005524
Aed5g2217 907 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 729 743 IPR001270 GO:0005524
Aed5g2217 907 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 622 640 IPR001270 GO:0005524
Aed5g2217 907 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 667 685 IPR001270 GO:0005524
Aed5g2217 907 ProSiteProfiles UVR domain profile. 492 527 IPR001943 GO:0005515
Aed5g2217 907 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 567 884 IPR027417 -
Aed5g2217 907 Gene3D UVR domain 484 548 - -
Aed5g2217 907 Gene3D - 570 796 IPR027417 -
Aed5g2217 907 ProSiteProfiles Clp repeat (R) domain profile. 89 231 IPR004176 -
Aed5g2217 907 ProSitePatterns Chaperonins clpA/B signature 2. 652 670 IPR028299 -
Aed5g2217 907 Pfam AAA domain (Cdc48 subfamily) 617 791 IPR003959 GO:0005524|GO:0016887
Aed5g2217 907 Gene3D - 798 895 - -
Aed5g2217 907 SUPERFAMILY Double Clp-N motif 90 200 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2217 Aed-Chr5 24213478 24219926 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2217 K03696 - gmx:100814891 1663.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0770 10 6326958 6333022 Aed5g2217 5 24213478 24219926 ECH
Aed5g2217 5 24213478 24219926 Aed5g2217 5 24213478 24219926 ECH
Aed5g2217 5 24213478 24219926 Aed10g0770 10 6326958 6333022 PCT