Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0770 ATGGCTAGGGTTTTGGCTCAGTCTGTTAATGTCCCTGGTCTAGTGGCTGAGCATAGGCATGGTCAGCAAAAAGGATCAGGAAAATTAAAAAGATCGACCAAAATGATGAGTGCTTTACGAACAAATGGATTAAGAATGTCAGGTTTCTCAGGGCTTCGTACTTTTAATCGTTTGGATACTATGTTGAGACCTGGAATAGATTTCCATTCTAAGGTTATTCGCATGGTAGGTGAGAGTGCTGATAGTGTTACTGCTACTGTTGGCTCAGGAAGTAGTGGCAATAAGATGCCAACTTTGGAGGAGTATGGTACCAATTTGACCAAGCTAGCGGAAGAGGGAAAATTGGATCCTGTTGTGGGAAGGCAGCCACAAATTGAACGTGTGACTCAAATTTTAGGTCGTCGGACAAAAAATAATCCTTGTCTTATTGGAGAACCTGGTGTTGGGAAGACAGCAATTGCTGAAGGTCTTGCTCAGCGGATTGCAAATGGTGATGTACCTGAAACCATAGAGGGGAAAAAGTTTGAGGAGAGGTTGAAGAAACTGATGGAAGAAATCAAACAAAGTGACGAGATCATACTTTTTATCGATGAAGTGCACACTTTGATTGGAGCAGGAGCAGCAGAAGGGGCAATTGATGCTGCTAACATACTAAAGCCAGCTCTTGCAAGAGGTGAACTACAGTGTATAGGAGCCACAACATTAGACGAATACAGGAAGCACATTGAAAAAGATCCTGCTTTAGAGAGACGATTCCAGCCAGTTAAAGTGCCAGAGCCAACTGTAGATGAAACCATACAAATACTGAAAGGACTTAGAGAACGATATGAAATTCACCACAAGCTCCGCTATACTGATGAGGCTCTTGTAGCTGCTGCACAGCTGTCGTACCAGTATATTAGTGATCGATTTTTGCCCGACAAAGCTATAGATTTGATTGATGAAGCTGGTTCACGAGTACGGCTTCAACATGCACAGTTACCTGAAGAAGCAAGAGATCTTGACAAGGAGGTCAGGCAAATTATTAAGGAGAAAGAAGAAGCTGTTCGCAACCAAGACTTTGAAAAGGCTGGAGAACTACGAGATAGAGAAATGGATCTTAAGGCACAGATCTCAACACTTGTAGAGAAAGGCAAGGAGATGAGCAAGGCAGAGACTGAGGCAGGGGAGGCAGGTCCCATTGTGACTGAAGCTGACATACAGCATATTGTCTCATCCTGGACTGGTATTCCTGTTGAGAAAGTCTCAACAGATGAATCTGATCGCCTTCTCAAGATGGAAGAGACTTTACATAAGCGAGTCATTGGTCAGGATGAAGCAGTTAAAGCCATTAGTCGGGCTATCCGTCGAGCTCGGGTTGGATTAAAGAACCCTAACCGTCCTATTGCCAGCTTCATCTTTTCTGGTCCAACTGGTGTGGGGAAGTCTGAGTTGGCCAAAGCATTGGCAGCATACTACTTCGGCTCTGAAGAAGCTATGATTCGGCTTGATATGAGTGAGTTTATGGAAAGGCACACTGTCTCCAAACTCATTGGTTCACCTCCTGGATATGTTGGTTATACTGAAGGTGGTCAATTGACTGAGGCAGTTCGACGTCGTCCTTACACTGTTGTACTGTTTGATGAGATTGAGAAAGCTCACCCTGATGTGTTCAACATGATGCTTCAGATCCTGGAAGATGGAAGACTAACAGACAGTAAGGGCAGAACAGTGGATTTCAAGAACACACTTCTTATAATGACATCAAATGTTGGAAGCAGCGTGATTGAGAAAGGAGGTCGCAAAATTGGATTTGATCTGGATTATGATGAGAAGGATAGCAGCTATAACAGAATCAAGAGCCTGGTGACTGAGGAGCTAAAACAATACTTCAGGCCAGAATTTTTGAATAGGTTGGACGAAATGATAGTCTTCAGGCAACTCACAAAACTGGAGGTGAAGGAGATTGCCGACATAATGCTCAATGAGGTGTTTGATAGACTGAAAGTGAAAGACATTGAACTTCAAGTGACAGAAAGATTTAGGGACAGAGTGGTGGACGAAGGCTATAATCCTAGTTATGGAGCCAGGCCTCTAAGAAGAGCCATAATGCGACTTTTGGAGGACAGCATGGCTGAGAAGATGCTTGCTAGAGAGATCAAAGAGGGCGACTCTGTCATAGTGGATGTTGATTCTGATGGTAATGTGATTGTGCTCAATGGCAGCAGCGGAGCCCCTGAGTCCTTACCAGAGGCACTTCCTGTATAA 2247 0.4397 MARVLAQSVNVPGLVAEHRHGQQKGSGKLKRSTKMMSALRTNGLRMSGFSGLRTFNRLDTMLRPGIDFHSKVIRMVGESADSVTATVGSGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEARDLDKEVRQIIKEKEEAVRNQDFEKAGELRDREMDLKAQISTLVEKGKEMSKAETEAGEAGPIVTEADIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLNEVFDRLKVKDIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVIVLNGSSGAPESLPEALPV 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0770 748 Gene3D - 641 738 - -
Aed10g0770 748 CDD AAA 435 583 - -
Aed10g0770 748 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 465 483 IPR001270 GO:0005524
Aed10g0770 748 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 510 528 IPR001270 GO:0005524
Aed10g0770 748 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 539 557 IPR001270 GO:0005524
Aed10g0770 748 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 572 586 IPR001270 GO:0005524
Aed10g0770 748 Gene3D - 413 639 IPR027417 -
Aed10g0770 748 Pfam C-terminal, D2-small domain, of ClpB protein 641 721 IPR019489 -
Aed10g0770 748 Gene3D - 263 407 - -
Aed10g0770 748 PANTHER ATP-DEPENDENT CLP PROTEASE 67 745 - -
Aed10g0770 748 ProSiteProfiles UVR domain profile. 335 370 IPR001943 GO:0005515
Aed10g0770 748 ProSitePatterns Chaperonins clpA/B signature 1. 213 225 IPR018368 GO:0005524
Aed10g0770 748 SMART AAA_5 136 258 IPR003593 -
Aed10g0770 748 SMART AAA_5 461 642 IPR003593 -
Aed10g0770 748 Pfam AAA domain (Cdc48 subfamily) 460 634 IPR003959 GO:0005524|GO:0016887
Aed10g0770 748 Coils Coil 172 192 - -
Aed10g0770 748 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 410 728 IPR027417 -
Aed10g0770 748 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 359 IPR027417 -
Aed10g0770 748 CDD AAA 119 253 - -
Aed10g0770 748 Gene3D - 87 261 IPR027417 -
Aed10g0770 748 Coils Coil 331 351 - -
Aed10g0770 748 ProSitePatterns Chaperonins clpA/B signature 2. 495 513 IPR028299 -
Aed10g0770 748 Pfam ATPase family associated with various cellular activities (AAA) 141 239 IPR003959 GO:0005524|GO:0016887
Aed10g0770 748 SMART ClpB_D2_small_2 641 731 IPR019489 -
Aed10g0770 748 Pfam AAA lid domain 261 362 IPR041546 -
Aed10g0770 748 Gene3D UVR domain 327 391 - -
Aed10g0770 748 PANTHER CHAPERONE PROTEIN CLPC1, CHLOROPLASTIC 67 745 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0770 Aed-Chr10 6326958 6333022 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0770 K03696 - gmx:100804035 1264.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0770 10 6326958 6333022 Aed5g2217 5 24213478 24219926 ECH
Aed10g0770 10 6326958 6333022 Aed10g0770 10 6326958 6333022 ECH
Aed5g2217 5 24213478 24219926 Aed10g0770 10 6326958 6333022 PCT