Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2206 ATGGGCAATTGCTGCTCCGACGTCGCCGGCGGCCAAACAGCCATCGGCACCACCGCCGCCGGCCACCTCAATCCGGCCAACGCTCCCAACGAAGCCGTCGATCGCTTCCTCAGGTCTCGCGGCTACAACGGCCTCTTCTCTCAGATCGAGTTGTCGTTTTCTGCTTCTGGCTTGCGTGATCGGGATGTGCTCTCCAAGAGTGATCCAATGATGGTTCTTTATGCAAGAGGAACAAATGGAGCACTCGAGGAACTTGGCCGGACAGAAGTAATTCTGAATTCGTTAAATCCTACATGGATTACTAAACACACTCTCATATATCATTTCGAGGTTGTTCAGGTTTTAGTGTTTCGTGTGTATGATGTTGACACTCAGTTTCACAACATAGATGTAAAGATGCTTAAGCTAGAAGAGCAACAATATCTAGGTGAGGCAACCTGTGCATTATCTGAGATAATTACGAAGTTTGATCGATCAATGACATTAGATTTACACAGAAGAGAAGATTCTGTCAGATCTACCCAGTCCCAAAACTGTGGAAAGCTCTTGGTGCATGCTGAAGAATGTGTTAGCTCAAAGACTACAATAGAGTTGATTCTCAGGTGTTCAGATTTGGAATATAGGGATCTCTTCTCAAGAAGTGATCCCTTTTTATTGCTATCAAAAGTTGTGGAAGGTGGTAGCCATATTCCAATTTGTAAAACAGAAGTTATAAAGAATGATCACAGCCCAATATGGAAGCCAGTGTTCTTGAATATTCAACAAGTAGGAAGCAAGGAAAGCCCTTTGATAATAGAGTGCTATAACTTCAATAGCAATGGAAAACATGATTTGATGGGAAAAGTGCAGAAATCTTTGGTAGAGTTGGAGAAGCTTTATTCAGGTGGCCAAGGAGAACATTTTATTTCGTCCACAGCGGGTCATAATTCTCATAACAAGGTGTTAAAGAGCCAGTTATTTGTGGACAAGTTTGCTGAAAGTGTCCAATATAGTTTCCTGGATTACTTGGCTGGGGGATTTGAATTGAACTTCATGGTGGCTATTGATTTTACAGCTTCAAATGGAAATCCACGCCTTCCAGATTCTTTGCATTACATTGATCCTTCAGGACGGCCAAATGCATACCAGAAGGCAATTATAGAGGTTGGGGAGGTGTTACAGTATTATGATTCAGACAAGCGATTTCCTACATGGGGATTTGGAGCACGACCAATTGATGCTCCTGTCTCCCATTGTTTCAACTTGAATGGAAGCAGCCATTACTGTGAGGTGGAAGGCATCCAAGGAATTATGATGGCCTACACAAGTGCCCTGCTTAACGTTTCTCTTGCAGGACCAACTCTTTTTGGACCTGTCATAAGCAATGCTGCGCTGATTGCCAGCCAATCATTAGCAAATGGTGGAAGAAAGTACTTTGTTTTGTTAATCATCACAGATGGAGTAGTGACAGATCTCCAAGAAACAAAAGATGCTCTCGTTAAAGCATCTGATCTTCCATTATCAATCCTTATTGTTGGCGTAGGAGGAGCTGATTTCAAAGAAATGGAGGTTTTGGATGCTGACAAAGGAGAGAGACTTGAAAGTTCATCTGGTCGCGTTGCTTCACGTGATATAGTCCAGTTTGTTCCATTTCGTGACGTTCAAAGTGGAGAGATTTCAGTAGTTCAAGCACTTCTAGCTGAATTGCCTACTCAATTTTTAAGTTACATGCGGAGCAGAAATATCCAACCGAATCCCATCTAG 1743 0.428 MGNCCSDVAGGQTAIGTTAAGHLNPANAPNEAVDRFLRSRGYNGLFSQIELSFSASGLRDRDVLSKSDPMMVLYARGTNGALEELGRTEVILNSLNPTWITKHTLIYHFEVVQVLVFRVYDVDTQFHNIDVKMLKLEEQQYLGEATCALSEIITKFDRSMTLDLHRREDSVRSTQSQNCGKLLVHAEECVSSKTTIELILRCSDLEYRDLFSRSDPFLLLSKVVEGGSHIPICKTEVIKNDHSPIWKPVFLNIQQVGSKESPLIIECYNFNSNGKHDLMGKVQKSLVELEKLYSGGQGEHFISSTAGHNSHNKVLKSQLFVDKFAESVQYSFLDYLAGGFELNFMVAIDFTASNGNPRLPDSLHYIDPSGRPNAYQKAIIEVGEVLQYYDSDKRFPTWGFGARPIDAPVSHCFNLNGSSHYCEVEGIQGIMMAYTSALLNVSLAGPTLFGPVISNAALIASQSLANGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEVLDADKGERLESSSGRVASRDIVQFVPFRDVQSGEISVVQALLAELPTQFLSYMRSRNIQPNPI 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2206 580 CDD C2A_Copine 47 168 - -
Aed5g2206 580 SMART VWA_4 341 538 IPR002035 -
Aed5g2206 580 CDD C2B_Copine 196 291 IPR037768 -
Aed5g2206 580 ProSiteProfiles C2 domain profile. 29 164 IPR000008 -
Aed5g2206 580 PANTHER CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING COPINE FAMILY PROTEIN-RELATED 1 577 - -
Aed5g2206 580 CDD vWA_copine_like 312 566 IPR010734 -
Aed5g2206 580 Gene3D C2 domain 52 194 IPR035892 -
Aed5g2206 580 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 53 165 IPR035892 -
Aed5g2206 580 ProSiteProfiles C2 domain profile. 178 303 IPR000008 -
Aed5g2206 580 Gene3D C2 domain 195 314 IPR035892 -
Aed5g2206 580 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 199 292 IPR035892 -
Aed5g2206 580 Pfam C2 domain 54 154 IPR000008 -
Aed5g2206 580 Pfam C2 domain 199 298 IPR000008 -
Aed5g2206 580 ProSiteProfiles VWFA domain profile. 343 562 IPR002035 -
Aed5g2206 580 Pfam Copine 362 577 IPR010734 -
Aed5g2206 580 SUPERFAMILY vWA-like 342 524 IPR036465 -
Aed5g2206 580 SMART C2_3c 48 161 IPR000008 -
Aed5g2206 580 SMART C2_3c 199 301 IPR000008 -
Aed5g2206 580 PANTHER COPINE 1 577 IPR045052 GO:0005544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2206 Aed-Chr5 24122269 24129614 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2206 - - gmx:100807801 1105.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2206 5 24122269 24129614 Aed5g2206 5 24122269 24129614 ECH
Aed5g2206 5 24122269 24129614 Aed10g0758 10 6217507 6225336 PCT