Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0758 ATGGGAAACTGCTTCTCCGAAGTCGCCGCGGGCCGCGCTGCAATAGGCGGCACCGCTGTCGATTTCCGGAATCTGGCCGGCGCTCCAAACGACGCCGTCGAGAACTTCCTCAGGTCTCGCGGCCACCAAGGACTCTTCTCTCAGATCGAGTTGTCGTTTTCAGCTTCTGGATTGCGTGATCGTGATGTGCTCTTCAAGAGTAATCCAATGATGGTTCTTTATGCAAGAGGAAAAAATGGAGCACTTGAGGAGCTTCGCCGCACGGAAGTAGTTCTGAATTCATCAAGTCCCACATGGATTACTAAACACACCCTCATATATCATTTTGAGGTTGTTCAGGTTTTAGTGTTTCGTGTGTATGATGTTGATACTCAGTTTCACAATGTAGCTATGAAGATGCTCGAGCTTGATGAGCAACAATTTCTTGGTGAGGCAACCTGTGTACTGTCTCAGATAATCACACAACCTAATCAATCATTGACTGTAGATCTACACACAGAAGATTCTATCAGATCTACCCTTCCGAAAAACTGTGGGAAACTCATGGTGCATGCTGAGGAATGTGTTAGCTCAAAGATTGCAATAGAGATGACTTTAAGGTGTTCAGATTTGGAATACAAGGATCTCTTCTCAAGAACTGACCCCTTTTTATTGATATCAAAAGTTGCAGAAGGTGGGGCCCAAATTCCAATTTGCAAAACAGAAGTTATACGGAATGATCTCAACCCAATATGGAAGTCAGTGTTTGTGAATATTCAACAAGTAGGAAGCAAGGACAGTCCTTTGATAATAGAGTGCTATAACTTTAATAGCAATGGAAAACATGATTTAATGGGAAAAGTGCAGAGATCTTTGGCGGAGTTGGAGAACATTCATAATAATGGCCAAGGAGAAAATTTATTTTTGCCTTCTGCTGGTGGACAAAACCATGATAACAAGGCATTGAAGAGTCAACTATTTGTGGAAAAATTTACTGAAAGTGTCCAATATACTTTCTTGGATTACTTGGCGGGGGGATTTGAATTGAACTTTATGGTGGCTGTTGACTTTACAGCTTCAAATGGAAATTCACGCCTTCCAGATTCTTTGCATTATATTGATCCTTCAGGACGGCCAAATGCATACCAGAGGGCAATTGTTGAGGTTGGGGAAGTGTTACAGTTTTATGATTCAGACAAACGATTTCCTACTTGGGGATTTGGGGCACGACCTATTGATGGTCCTGTTTCCCATTGTTTCAACTTGAATGGAAGTAGTCATTACTGCGAGGTGGAAGGGATCCAAGGAATTATGATGGCTTACACAAGTGCCCTGCTTAATGTATCTCTTGCAGGACCTACGCTTTTTGGACCGGTCATAAGCACTGCTGCACTGATTGCCAGCCAATCTGTAGCAAATGGTGGAAGAAAGTACTTTGTTTTATTAATAATCACAGATGGAGTAGTGACAGATCTTCAAGAAACAAAAGATGCTATTGTTAAAGCATCTGACCTGCCATTATCAATCCTTATTGTTGGGGTAGGAGGAGCTGATTTCAAAGAAATGGAGGTTTTGGATGCAGACAAGGGAGAGAGGCTAGAAAGTTCATATGGACGCGTTGCTTCACGTGATATAGTCCAATTTGTTCCATTTCGGGAGGTTCAAAGTGGATTTTCAGTTGTTCAAGCACTTCTAGCAGAATTACCGACTCAATTTTTAAGTTACGTGCGGAGCAGAAATATCCAACCGAGCCTCTAG 1737 0.4243 MGNCFSEVAAGRAAIGGTAVDFRNLAGAPNDAVENFLRSRGHQGLFSQIELSFSASGLRDRDVLFKSNPMMVLYARGKNGALEELRRTEVVLNSSSPTWITKHTLIYHFEVVQVLVFRVYDVDTQFHNVAMKMLELDEQQFLGEATCVLSQIITQPNQSLTVDLHTEDSIRSTLPKNCGKLMVHAEECVSSKIAIEMTLRCSDLEYKDLFSRTDPFLLISKVAEGGAQIPICKTEVIRNDLNPIWKSVFVNIQQVGSKDSPLIIECYNFNSNGKHDLMGKVQRSLAELENIHNNGQGENLFLPSAGGQNHDNKALKSQLFVEKFTESVQYTFLDYLAGGFELNFMVAVDFTASNGNSRLPDSLHYIDPSGRPNAYQRAIVEVGEVLQFYDSDKRFPTWGFGARPIDGPVSHCFNLNGSSHYCEVEGIQGIMMAYTSALLNVSLAGPTLFGPVISTAALIASQSVANGGRKYFVLLIITDGVVTDLQETKDAIVKASDLPLSILIVGVGGADFKEMEVLDADKGERLESSYGRVASRDIVQFVPFREVQSGFSVVQALLAELPTQFLSYVRSRNIQPSL 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0758 578 ProSiteProfiles C2 domain profile. 28 162 IPR000008 -
Aed10g0758 578 Gene3D C2 domain 52 193 IPR035892 -
Aed10g0758 578 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 54 166 IPR035892 -
Aed10g0758 578 Pfam Copine 362 576 IPR010734 -
Aed10g0758 578 Pfam C2 domain 54 158 IPR000008 -
Aed10g0758 578 Pfam C2 domain 199 292 IPR000008 -
Aed10g0758 578 SMART VWA_4 341 538 IPR002035 -
Aed10g0758 578 CDD vWA_copine_like 312 565 IPR010734 -
Aed10g0758 578 ProSiteProfiles VWFA domain profile. 343 557 IPR002035 -
Aed10g0758 578 CDD C2A_Copine 47 166 - -
Aed10g0758 578 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 199 292 IPR035892 -
Aed10g0758 578 PANTHER PROTEIN BONZAI 2 1 577 IPR031116 GO:0005544|GO:0060548
Aed10g0758 578 CDD C2B_Copine 195 288 IPR037768 -
Aed10g0758 578 SMART C2_3c 198 297 IPR000008 -
Aed10g0758 578 SMART C2_3c 48 161 IPR000008 -
Aed10g0758 578 SUPERFAMILY vWA-like 342 524 IPR036465 -
Aed10g0758 578 ProSiteProfiles C2 domain profile. 177 301 IPR000008 -
Aed10g0758 578 Gene3D C2 domain 194 313 IPR035892 -
Aed10g0758 578 PANTHER COPINE 1 577 IPR045052 GO:0005544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0758 Aed-Chr10 6217507 6225336 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0758 - - gmx:100799074 1087.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0758 10 6217507 6225336 Aed10g0758 10 6217507 6225336 ECH
Aed5g2206 5 24122269 24129614 Aed10g0758 10 6217507 6225336 PCT