Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2204 ATGGAAGCAGTGGATGTTGATCTAGGGCTAGGTGGTGGTGATGGTGTGGCCAAAGACAGCAGCGACTATGAACTCACCAAAATCCGTCTCCTCAAATCCATTCTTCAAACACGTCATCCCTCTTCCAAGGAAGAGGATGAGTTTATGATTAGAAGATTCCTGCGTGCTCGTGATTTAGATGTAGAGAAGGCTTCAGCAATGTTGCTCAATTACTTGAAATGGAGACATTCATTTGTTCCAAATGGTTCTGTATCTGTGTCGGATGTTCCTAACCAACTTGCACAAGATAAGGTGTTCTTGCAAGGACACGACAAGATAGGCCGACCTATACTTGTTGTCTTCGGTAGAAGACATTTTCAGATCAAAGATGGTCTAGATGAATTCAAACGGTTTGTAGTCTATGTTCTTGATAAAGTATGTGCAAGTATGCCTCCTGGGCAAGAAAAGTTTGTTGGTATAGCAGAAATTAAGGGATGGGGATACTCAAACAGTGACGTGCGTGGATACATTAGTGCTCTATCCTTTTTGCAGGATTACTACCCCGAAAGATTGGGGAAGTTGTTTATTGTGAATGCACCATACATTTTTATTAAAGTGTGGCAAATTGTTAGCCCCTTCATTGACAACAATACCAAGAAGAAGATAGTATTTGTGGAGAAAAATAAGGTGAAATCAACACTACTAGAAGAGATAGATGAAAGTCAGATTCCAGAGATATTTGGTGGTCCATTGCCATTAGTCCCAATTCAGGATAGCTAA 759 0.4071 MEAVDVDLGLGGGDGVAKDSSDYELTKIRLLKSILQTRHPSSKEEDEFMIRRFLRARDLDVEKASAMLLNYLKWRHSFVPNGSVSVSDVPNQLAQDKVFLQGHDKIGRPILVVFGRRHFQIKDGLDEFKRFVVYVLDKVCASMPPGQEKFVGIAEIKGWGYSNSDVRGYISALSFLQDYYPERLGKLFIVNAPYIFIKVWQIVSPFIDNNTKKKIVFVEKNKVKSTLLEEIDESQIPEIFGGPLPLVPIQDS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2204 252 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 86 248 IPR001251 -
Aed5g2204 252 SUPERFAMILY CRAL/TRIO N-terminal domain 18 81 IPR036273 -
Aed5g2204 252 PANTHER OS03G0850700 PROTEIN 18 252 - -
Aed5g2204 252 CDD SEC14 98 242 IPR001251 -
Aed5g2204 252 Gene3D - 17 250 IPR036865 -
Aed5g2204 252 SUPERFAMILY CRAL/TRIO domain 89 245 IPR036865 -
Aed5g2204 252 SMART sec14_4 92 245 IPR001251 -
Aed5g2204 252 Pfam CRAL/TRIO domain 97 242 IPR001251 -
Aed5g2204 252 PANTHER POLYPHOSPHOINOSITIDE-BINDING PROTEIN 18 252 - -
Aed5g2204 252 SMART CRAL_TRIO_N_2 46 71 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2204 Aed-Chr5 24105988 24110216 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2204 52 238 Acyl Lipid Metabolism Gene Families AT5G47730 28.708 2.24e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2204 - - gmx:548015 443.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0754 10 6183305 6185596 Aed5g2204 5 24105988 24110216 ECH
Aed5g2204 5 24105988 24110216 Aed5g2204 5 24105988 24110216 ECH
Aed5g2204 5 24105988 24110216 Aed10g0754 10 6183305 6185596 PCT