Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2199 ATGTCCGGGGCAGGCCAAGCCATAGACATGGAGCAGCACGTGGGGTTTTCGAAAGCGAAAGCCGATCATGGGCGTGGCAAGAAAACGGGTCCGGTTTCGATGGATCACGTGCTTCTTGCTCTGCGTGAGACAAAGGAGGAGAGGGATCTTCGAATTCGGAGTCTCTTCAATTTCTTCGATGCTGCCAATAATGGGTACTTGGACTATGCTCACATTGAGGCCGGTTTGTCTGCACTGCAGATTCCCCCTGAGTATAAGTATGCTAAGGAGCTTTTCAAGGTGTGTGATGCAGATAGGGATGGCAGGATCGAGTACCATGACTTCAGGCGTTACATGGATGACAAGGAGTTGGAGCTTTATCGCATATTTCAGGCCATTGATGTTGAGCATAGTGGCTGCATTCTCCCTGAGGAGCTTTGGGATGCACTTGTCAGGGCTGATTCAAAAAAAGATAGAAAGAGCTTTGGGAATAATTCTGGGAGGATTGAAATTGATGAGGAGGAGCTTGCTCGCTTTGTGGAGCATGTTGATAAGGATAATAATGGAATTATCACTTTTGAAGAGTGGAGAGATTTTCTTCTACTATATCCTCATGAAGCAACTCTTGAAAACATATATCAGCATTGGGAGAGGGTGTGCCTTGTTGACATTGGAGAACAAGCTGTCATTCCTGAAGGCATCAGCAAGCATGTGCACAGGAGCAGGTATTTTATTGCAGGGGGGATAGCAGGAGCTGCTTCTCGTACAGCAACTGCTCCTCTTGATCGTCTAAAGGTGCTCTTACAAGTTCAGACTGGACGAGCTTCTATTATGCCAGCAGTGATGAAGATATGGCAACAAGATGGTTTATTAGGATTTTTCCGAGGTAACGGTTTGAATGTTGTGAAGGTAGCTCCAGAGAGTGCCATCAAGTTTTATGCTTATGAAATGCTGAAGAATGTAATTGGGGATGGTCATGGGGGCAAGTCAGATATTGGTACTGCAGGAAGACTTTTTGCTGGTGGTATGGCTGGTGCAGTTGCACAGATTGCTATCTATCCAATGGATCTTGTCAAAACTAGGTTACAGACTTGTACTACTGATGGTGGAAGGGTTCCTAAGCTTGGCACACTTACAAAGGATATATGGGTCCATGAGGGACCTCGGGCTTTCTACAGAGGGCTTGTTCCGTCTCTTCTTGGTATGATTCCTTATGCAGGGATTGATCTCACTGCATATGACACCTTGAAAGATCTATCCAAGAGATATATTCTTTATGACCGTGATCCTGGTCCTCTAGTACAACTTGGATGTGGGACAGTTTCAGGTGCTCTTGGTGCTACTTGTGTCTATCCGCTGCAGGTTATTCGTACAAGACTGCAGGCACAACCTGCCAACAGTCCTAGTTCTTACAAGGGAATGTCTGATGTATTCTGGAAAACTCTTAAGGATGAAGGCTTTAGAGGTTTCTACAAGGGACTCATTCCTAATCTCCTCAAAGTTGTGCCAGCTGCAAGCATTACTTATATGGTTTACGAAAATATGAAGAAGAGTCTAGATCTTGAGTAG 1548 0.4522 MSGAGQAIDMEQHVGFSKAKADHGRGKKTGPVSMDHVLLALRETKEERDLRIRSLFNFFDAANNGYLDYAHIEAGLSALQIPPEYKYAKELFKVCDADRDGRIEYHDFRRYMDDKELELYRIFQAIDVEHSGCILPEELWDALVRADSKKDRKSFGNNSGRIEIDEEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATLENIYQHWERVCLVDIGEQAVIPEGISKHVHRSRYFIAGGIAGAASRTATAPLDRLKVLLQVQTGRASIMPAVMKIWQQDGLLGFFRGNGLNVVKVAPESAIKFYAYEMLKNVIGDGHGGKSDIGTAGRLFAGGMAGAVAQIAIYPMDLVKTRLQTCTTDGGRVPKLGTLTKDIWVHEGPRAFYRGLVPSLLGMIPYAGIDLTAYDTLKDLSKRYILYDRDPGPLVQLGCGTVSGALGATCVYPLQVIRTRLQAQPANSPSSYKGMSDVFWKTLKDEGFRGFYKGLIPNLLKVVPAASITYMVYENMKKSLDLE 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2199 515 Gene3D - 130 219 - -
Aed5g2199 515 ProSiteProfiles Solute carrier (Solcar) repeat profile. 423 511 IPR018108 -
Aed5g2199 515 ProSitePatterns EF-hand calcium-binding domain. 96 108 IPR018247 -
Aed5g2199 515 ProSiteProfiles Solute carrier (Solcar) repeat profile. 325 412 IPR018108 -
Aed5g2199 515 SUPERFAMILY EF-hand 37 230 IPR011992 -
Aed5g2199 515 Gene3D - 15 118 - -
Aed5g2199 515 ProSiteProfiles EF-hand calcium-binding domain profile. 83 118 IPR002048 GO:0005509
Aed5g2199 515 Gene3D Mitochondrial carrier domain 227 513 IPR023395 -
Aed5g2199 515 ProSiteProfiles Solute carrier (Solcar) repeat profile. 231 314 IPR018108 -
Aed5g2199 515 Pfam EF hand 90 110 IPR002048 GO:0005509
Aed5g2199 515 ProSitePatterns EF-hand calcium-binding domain. 177 189 IPR018247 -
Aed5g2199 515 SMART efh_1 118 146 IPR002048 GO:0005509
Aed5g2199 515 SMART efh_1 51 79 IPR002048 GO:0005509
Aed5g2199 515 SMART efh_1 168 196 IPR002048 GO:0005509
Aed5g2199 515 SMART efh_1 87 115 IPR002048 GO:0005509
Aed5g2199 515 PANTHER SOLUTE CARRIER FAMILY 25 61 512 - -
Aed5g2199 515 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 61 512 - -
Aed5g2199 515 SUPERFAMILY Mitochondrial carrier 230 507 IPR023395 -
Aed5g2199 515 ProSiteProfiles EF-hand calcium-binding domain profile. 164 199 IPR002048 GO:0005509
Aed5g2199 515 PRINTS Mitochondrial carrier protein signature 249 263 IPR002067 GO:0055085
Aed5g2199 515 PRINTS Mitochondrial carrier protein signature 385 403 IPR002067 GO:0055085
Aed5g2199 515 PRINTS Mitochondrial carrier protein signature 432 454 IPR002067 GO:0055085
Aed5g2199 515 PRINTS Mitochondrial carrier protein signature 236 249 IPR002067 GO:0055085
Aed5g2199 515 PRINTS Mitochondrial carrier protein signature 289 309 IPR002067 GO:0055085
Aed5g2199 515 PRINTS Mitochondrial carrier protein signature 340 358 IPR002067 GO:0055085
Aed5g2199 515 Pfam Mitochondrial carrier protein 424 512 IPR018108 -
Aed5g2199 515 Pfam Mitochondrial carrier protein 324 413 IPR018108 -
Aed5g2199 515 Pfam Mitochondrial carrier protein 234 316 IPR018108 -
Aed5g2199 515 ProSiteProfiles EF-hand calcium-binding domain profile. 47 82 IPR002048 GO:0005509
Aed5g2199 515 Pfam EF-hand domain pair 118 191 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2199 Aed-Chr5 24084803 24088770 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2199 27 515 EF-hand Containing Proteins AT5G51050 75.560 0.0 755
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2199 K14684 - gmx:100791305 951.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0747 10 6150882 6156077 Aed5g2199 5 24084803 24088770 ECH
Aed5g2199 5 24084803 24088770 Aed5g2199 5 24084803 24088770 ECH