Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2184 ATGGCTGAGGAGGCTCCAACCCAAACAGCCGCACCAACACCACCTCAATTAGAGTCAGTGGTGCAAGTGGTGATAACCGATGTTCCACAGCCCGACAAAACAACAACAACCACTGTTCCAGCTGTTGATGAAAGAGATTCACAACCACAACCTGAACCTGAAACTGATGAGAAGAAAAAACCCGTTGAGGAAACCGTCACCCTCGAGACTCACCTCTCCAAACCCACTAATGCTGACGACGACAAAATCCCTGAATTCAAGGAAGAAAGCACCAAACTCTCTGACCTCCCAGAGAACGAGAACAAGGCACTCCAGGACCTTAAGAAGCTCGTTCAAGACGCTCTCAACAACCACGACTTCTCTTCCAAACAAGACCTCAAGAACCCACCACCACCACCAACTGCTTCTGACAACAACGAACAACAACAACAACAAGCTGAAACTAAAACTGAGGAGGAGCAAGTTGAAACACCGAAGGAGGAAGAAGTAAAGAAGGAGGAAGAAGAAAAGAAGGATGACGAGGTAAAGAAGGAGGAAGTGAAAGACACTAAGGAAGAAGCTGTGGTGGATGATGATGGAGCGAAAACTGTGGAGGCCATTGAAGAGACCGTTGTTGCTGTCTCTTCTTCCGTTCAGCCTCAAGCTGAAGAGAAAGCTTCTGAAACAGAAGCCAAAGAGGAAGAAGCTTCATTGCCACAGCTTCCACCTGAAGAGGTTTCCATTTATGGGATACCACTGCTCGCAGACGAGAGGAGCGATGTGATTCTGCTGAAGTTTCTGCGCGCGAGAGAGTTCAAGGTGAAGGAGGCACTCGCTATGCTGAAGAACACGGTCCGGTGGAGGAAGGAGTTTGGGATGGAGGAGTTGATGGAGGAGAAGCTCGGGGATGAGTTGGAGAAGGTGGTGTTCATGCATGGCTTTGACAAGGAGGGGCACCCTGTGTGTTACAACATTTATGGTGAGTTCCAGAACAAGGAGTTGTACAAGAAGACATTTTCTGACGAGGAGAAGAGGGAGAAGTTCCTGAGGTGGAGAATTCAGTTCCTTGAGAAGAGTATTAGGAACCTGGATCTCAACCCTGGTGGCATATGCACCATTGTTCAAGTCAATGACCTCAAGAACTCTCCAGGACCTGCCAAGTGGGAACTTAGACAAGCCACCAAACATGCCCTACAATTGCTTCAAGACAATTACCCTGAATTTGTTGCCAAACAGGTGTTCATCAATGTGCCATGGTGGTACCTGGCAGTGAATAGGATGATAAGCCCTTTCCTTACTCAGAGGTCCAAAAGCAAGTTTGTCTTTGCTGGGCCTTCCAAATCAACGGAAACCCTTTTGAGATACATAGCTCCCGAGCAGCTTCCGGTGAAGTACGGTGGACTAAGCAAAGATGGGGAGTTCGGAAATACCGATGCTGTCACAGAAATCACAGTGAGGCCTGCAGCAAAACATACTGTGGAATTTTCAGTTAGTGAGAACTGCTTACTCTCTTGGGAGCTCAGAGTAATAGGGTGGGAAGTAAGCTATGGTGCAGAATTTGTGCCAAGCACAGAAGGAAGCTACACAGTAATTGTGCAGAAGGCTAGAAAGGTTGGTTCATCAGAAGAACCAGTGCTTTGCAACAGTTTTAAGGTTGGTGAGCCTGGGAAAGTTGTTCTCACGATTGACAACACAAGCTCTAAGAAGAAGAAGCTCTTGTACCGCTTGAAGACCAAGCCTTCCCCCTCTGACTAA 1734 0.4764 MAEEAPTQTAAPTPPQLESVVQVVITDVPQPDKTTTTTVPAVDERDSQPQPEPETDEKKKPVEETVTLETHLSKPTNADDDKIPEFKEESTKLSDLPENENKALQDLKKLVQDALNNHDFSSKQDLKNPPPPPTASDNNEQQQQQAETKTEEEQVETPKEEEVKKEEEEKKDDEVKKEEVKDTKEEAVVDDDGAKTVEAIEETVVAVSSSVQPQAEEKASETEAKEEEASLPQLPPEEVSIYGIPLLADERSDVILLKFLRAREFKVKEALAMLKNTVRWRKEFGMEELMEEKLGDELEKVVFMHGFDKEGHPVCYNIYGEFQNKELYKKTFSDEEKREKFLRWRIQFLEKSIRNLDLNPGGICTIVQVNDLKNSPGPAKWELRQATKHALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRSKSKFVFAGPSKSTETLLRYIAPEQLPVKYGGLSKDGEFGNTDAVTEITVRPAAKHTVEFSVSENCLLSWELRVIGWEVSYGAEFVPSTEGSYTVIVQKARKVGSSEEPVLCNSFKVGEPGKVVLTIDNTSSKKKKLLYRLKTKPSPSD 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2184 577 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 291 466 IPR001251 -
Aed5g2184 577 MobiDBLite consensus disorder prediction 28 44 - -
Aed5g2184 577 MobiDBLite consensus disorder prediction 218 232 - -
Aed5g2184 577 MobiDBLite consensus disorder prediction 47 67 - -
Aed5g2184 577 CDD SEC14 297 461 IPR001251 -
Aed5g2184 577 Pfam CRAL/TRIO domain 300 460 IPR001251 -
Aed5g2184 577 Pfam CRAL/TRIO, N-terminal domain 247 276 IPR011074 -
Aed5g2184 577 Gene3D - 287 476 IPR036865 -
Aed5g2184 577 MobiDBLite consensus disorder prediction 146 198 - -
Aed5g2184 577 PANTHER PATELLIN-1 1 577 IPR044834 GO:0008289
Aed5g2184 577 Coils Coil 163 183 - -
Aed5g2184 577 MobiDBLite consensus disorder prediction 203 217 - -
Aed5g2184 577 SUPERFAMILY CRAL/TRIO N-terminal domain 93 292 IPR036273 -
Aed5g2184 577 Gene3D GOLD domain 477 571 - -
Aed5g2184 577 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 472 570 IPR036598 -
Aed5g2184 577 SMART sec14_4 296 463 IPR001251 -
Aed5g2184 577 MobiDBLite consensus disorder prediction 74 107 - -
Aed5g2184 577 SMART CRAL_TRIO_N_2 252 277 IPR011074 -
Aed5g2184 577 Gene3D - 210 283 - -
Aed5g2184 577 PANTHER PATELLIN-3 PROTEIN 1 577 - -
Aed5g2184 577 SUPERFAMILY CRAL/TRIO domain 301 463 IPR036865 -
Aed5g2184 577 MobiDBLite consensus disorder prediction 26 232 - -
Aed5g2184 577 ProSiteProfiles GOLD domain profile. 470 571 IPR009038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2184 Aed-Chr5 23961245 23965007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g2184 256 455 Acyl Lipid Metabolism Gene Families AT5G47730 26.066 6.58e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2184 - - gmx:100788197 846.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2184 5 23961245 23965007 Aed10g0727 10 5957872 5962267 PCT