Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0727 ATGGCTGAGGAAGTTTCAAAGACAAACGCAACGGCTCAAGAGGAAGTGGTGGTCGCTGACGTGGCACCACCTGCTGAGAAGCCAGACACCACCAACGCTGTTGCTGTTCCCGCAGAACAACAAGAAGAAACCACGCCAGAGAAGGAGAGCGTTCCCGAAACTGAAACCAAATCCGAGGTTTCGAAACCAAGCGCTGGCGACGACAACATTCCCGAATCCGGTTCGTTCAAGGAAGAAAGCACCATTGTTTCCGACCTACCAGAACCCGAGAAAAAGGCGCTGCAAGAACTCAAACAACTCATTCAAGAAGCGCTCCACAAACACGAGTTCTCTGCTCCCAAGGATGAAAAGCCTTTGGTGGTGGCGGTGGAGGAAGAAAAGAAGGAGGAACAACCTGCCGCCACTGCTGCTGCTGACGTGGCAGAACCGACTGAAAAAGAAGCTGCAGATCAAGAAGTTAAGATAACCGAAGCTGAGGTTGTTGTTGTTGAAGAGAAAGCGGCGGTTTCCGCTTCTGCTGACGAGGATGGAACGAAAACCGTGGAGGCTATCGAGGAGAGTGTTGTGTCCGTGACCGTGACTGTCTCCGAGGAAGAAGCGAAGGTGGAAGAGACCGTTTCTGAAGAGGTTTCGATTTGGGGAGTGCCGCTTCTCGCAGACGAGAGGAGCGATGTGATTTTCCTGAAGTTTCTGCGAGCAAGGGACTTCAAGGTGAAGGAAGCGTTCTCAATGATAAGGAGCACGATCCGGTGGAGGAAGGAGTTCGGGATGGAGGAGCTGCTGGAGGAGGAGCTGGGCGATGATTTGGAGAAAGCGGTGTACATGCATGGGTTCGACAAGGAGGGTCACCCTGTGTGTTACAACATCTATGGAGAGTTTCAGAACAAGGAGTTGTACAAGAAGAGTTTCTCTGATGAGGAGAAGAGGTATAGGTTTCTGAGGTGGAGGATTCAGTTCCTGGAGAAGAGTATCAGGAAACTGGATTTTAGTCCTGGTGGGATAAGCACCATTGTTCAGGTTAATGATCTCAGGAATTCTCCTGGTCCTGCCAAGTGGGAGCTTAGACAGGCTACCAAACAGGCCCTCACCTTGCTTCAGGATAACTATCCTGAGTTTGTAGCCAAACAGGTGTTTATCAATGTGCCATGGTGGTACTTGGCAGTGAACAGGATGATAAGCCCTTTTCTTACTCAGAGAACCAAAAGCAAGTTTGTCTTTGCTGGACCTTCCAAATCAGCTGAGACCCTTTTGAGATACATTGCTGCTGAGCAACTTCCGGTCAAGTATGGTGGACTAAGCAAAGATGGGGAGTTCGGAATTTCCGATGCTGTTACAGAAATTACAGTGAGGCCAGCAGCAAAACATACCGTGGAGTTTCCAGTGACTGAGAACTCACTACTCTCTTGGGAGCTCAGAGTAATAGGGTGGGATGTAAGCTATGGTGCAGAGTTTGTGCCAACTTCAGAGGGAAGCTACACTGTGATCATTCAGAAGGCTAGAAAGGTTGCTTCATCAGAAGAACCAGTGCTTTGCAACAACTACAAAATTGGTGAACCTGGGAAAGTGGTTCTCACCATTGACAATCAAAGCTCTAAGAAGAAGAAGCTCTTGTACCGTTTGAAGGTCAAGCCGTCTTCTGACTGA 1644 0.4915 MAEEVSKTNATAQEEVVVADVAPPAEKPDTTNAVAVPAEQQEETTPEKESVPETETKSEVSKPSAGDDNIPESGSFKEESTIVSDLPEPEKKALQELKQLIQEALHKHEFSAPKDEKPLVVAVEEEKKEEQPAATAAADVAEPTEKEAADQEVKITEAEVVVVEEKAAVSASADEDGTKTVEAIEESVVSVTVTVSEEEAKVEETVSEEVSIWGVPLLADERSDVIFLKFLRARDFKVKEAFSMIRSTIRWRKEFGMEELLEEELGDDLEKAVYMHGFDKEGHPVCYNIYGEFQNKELYKKSFSDEEKRYRFLRWRIQFLEKSIRKLDFSPGGISTIVQVNDLRNSPGPAKWELRQATKQALTLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLSKDGEFGISDAVTEITVRPAAKHTVEFPVTENSLLSWELRVIGWDVSYGAEFVPTSEGSYTVIIQKARKVASSEEPVLCNNYKIGEPGKVVLTIDNQSSKKKKLLYRLKVKPSSD 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0727 547 CDD SEC14 273 432 IPR001251 -
Aed10g0727 547 Pfam CRAL/TRIO domain 271 431 IPR001251 -
Aed10g0727 547 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 262 437 IPR001251 -
Aed10g0727 547 PANTHER PATELLIN-3 PROTEIN 19 546 - -
Aed10g0727 547 SMART CRAL_TRIO_N_2 223 248 IPR011074 -
Aed10g0727 547 Coils Coil 146 166 - -
Aed10g0727 547 SUPERFAMILY CRAL/TRIO N-terminal domain 82 264 IPR036273 -
Aed10g0727 547 SMART sec14_4 267 434 IPR001251 -
Aed10g0727 547 Pfam CRAL/TRIO, N-terminal domain 196 246 IPR011074 -
Aed10g0727 547 MobiDBLite consensus disorder prediction 42 62 - -
Aed10g0727 547 MobiDBLite consensus disorder prediction 124 146 - -
Aed10g0727 547 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 442 544 IPR036598 -
Aed10g0727 547 PANTHER PATELLIN-1 19 546 IPR044834 GO:0008289
Aed10g0727 547 MobiDBLite consensus disorder prediction 1 90 - -
Aed10g0727 547 Gene3D - 190 446 IPR036865 -
Aed10g0727 547 SUPERFAMILY CRAL/TRIO domain 272 434 IPR036865 -
Aed10g0727 547 Gene3D GOLD domain 447 543 - -
Aed10g0727 547 ProSiteProfiles GOLD domain profile. 441 542 IPR009038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0727 Aed-Chr10 5957872 5962267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0727 227 426 Acyl Lipid Metabolism Gene Families AT1G55840 27.778 6.54e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0727 - - gmx:100805585 802.357
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0727 10 5957872 5962267 Aed10g0727 10 5957872 5962267 ECH
Aed5g2184 5 23961245 23965007 Aed10g0727 10 5957872 5962267 PCT