Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g2181 ATGGCGGCTCTGGTCATTGCTGCAACAAGTGAGAAACTGGCTGAAACTGATTGGATGAAAAATATTGAAATCTGTGAATTAGTCGCTCATGATCAAAGGCAAGCTAGAGATGTTGTTAAAGCTATAAAAAAGAGGCTGGGTAACAAGAACCCTAATATTCAACTTTATGCAGTCGCATTGCTGGAAATGTTGATGAACAATATTGGAGATCATGTTCACCAGCAGGTGGTTGATACAGGAATTATTCCTGTTTTTGTGAAAATTGTGAAGAAAAAATCAGATTTGCCTGTACGGGAGCGGATATTTCTCCTACTAGATGCCACACAAACATCCCTTGGTGGTGCTTCTGGAAAGTTTCCACAGTATTATAATGCATATTATGATTTGGTGAATACTGGGGTGGAGTTTCCTCAGATTGATCAAGTGACCCAATCAAATCGTCTGCGTTCACAACATAATGGGATTAACAATGTACCGAACAGGGAGCAGGCCCCGCCTAGACATCAGCAAGCAGAGTCCCAAACTGTTCCTGAATCTAGCATTATTCAAAAGGCTAGTAATGCATTAGAAGTTTTAAAAGAAGTCCTTGATGCTATTGATGCCCAACATCCTCAGGCAGCAAGAGATGAATTCACCCTTGACCTTGTCGAACAATGTTCATTTCAGAAGCAAAGGGTAATGCATCTTGTGATGACTTCTCGAGACGAGAGGATAGTTTCTCGAGCAATTGAATTAAACGAGCAACTTCAGAAAGTCCTTGCAAGACATGATAGCCTTCTATTGATCAGACCCACAACAATAGCTAATCACTTGAACTGTGAAGAAGCAGAGGAGGAAGAAGAACCAGAACAGTTATTCCGGAGATTACACAAAGGAAAGGCACAAGCAAGGCCTGAAGATGAAGAAAGAGAACCTGAGTTCCCTCACTTAAGTTTGCTTGAAGAGAGACTCAATCGTCCGTTAATAAAACCACTATCTTTGGAGCCGTCTCGAGAAGCTAATACTTATCCTGCAGCTACTGTGATTCCTCCTCCTCACATGGCAATTCCACCTCCGCCTTCAAAGCACATTGAGAGGGAAAGATATTTTCAGGAAAATAAAAAGGACGGTGCTACTTTGGCTGGCCACTTGAGAGGCCTCTCCTTGCATAGTCACAATGGCAGCAGCTCTCACAGTGGAAGCTTTGATTTTAGTGATTGA 1200 0.4217 MAALVIAATSEKLAETDWMKNIEICELVAHDQRQARDVVKAIKKRLGNKNPNIQLYAVALLEMLMNNIGDHVHQQVVDTGIIPVFVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYNAYYDLVNTGVEFPQIDQVTQSNRLRSQHNGINNVPNREQAPPRHQQAESQTVPESSIIQKASNALEVLKEVLDAIDAQHPQAARDEFTLDLVEQCSFQKQRVMHLVMTSRDERIVSRAIELNEQLQKVLARHDSLLLIRPTTIANHLNCEEAEEEEEPEQLFRRLHKGKAQARPEDEEREPEFPHLSLLEERLNRPLIKPLSLEPSREANTYPAATVIPPPHMAIPPPPSKHIERERYFQENKKDGATLAGHLRGLSLHSHNGSSSHSGSFDFSD 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g2181 399 Coils Coil 182 202 - -
Aed5g2181 399 CDD GAT_GGA_like_plant 181 259 - -
Aed5g2181 399 Pfam GAT domain 187 260 IPR004152 GO:0035091|GO:0043130
Aed5g2181 399 MobiDBLite consensus disorder prediction 151 179 - -
Aed5g2181 399 Gene3D - 171 267 IPR038425 -
Aed5g2181 399 PANTHER TOM1-LIKE PROTEIN 1 399 IPR044836 GO:0035091|GO:0043130|GO:0043328
Aed5g2181 399 MobiDBLite consensus disorder prediction 352 399 - -
Aed5g2181 399 Gene3D - 1 135 IPR008942 -
Aed5g2181 399 SMART VHS_2 1 133 IPR002014 GO:0035091|GO:0043130
Aed5g2181 399 ProSiteProfiles VHS domain profile. 8 137 IPR002014 GO:0035091|GO:0043130
Aed5g2181 399 PANTHER ENTH/VHS/GAT FAMILY PROTEIN 1 399 - -
Aed5g2181 399 MobiDBLite consensus disorder prediction 382 399 - -
Aed5g2181 399 Pfam VHS domain 5 110 IPR002014 GO:0035091|GO:0043130
Aed5g2181 399 SUPERFAMILY ENTH/VHS domain 3 138 IPR008942 -
Aed5g2181 399 CDD VHS 1 129 - -
Aed5g2181 399 MobiDBLite consensus disorder prediction 353 367 - -
Aed5g2181 399 SUPERFAMILY GAT-like domain 178 259 - -
Aed5g2181 399 ProSiteProfiles GAT domain profile. 173 261 IPR004152 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g2181 Aed-Chr5 23940189 23947145 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g2181 - - gmx:100802949 637.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g2181 5 23940189 23947145 Aed10g0722 10 5912382 5918307 PCT