Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1945 ATGTTTGGTGGAACAGACGTGCCCGCAATGATAAAGTGTTTCTCGGTGTCCTTAGCCTCTTTATGGGTTCTCCTTGCTCTCTGTTCTCTCAGTGTGTCATCTCAAAATATATCTGAGAGTGGCCTACAGCAAGCTAGCTTCCCACCAAGAGGTTGGAATTCCTATGATTCCTTTTGCTGGACAATTTCTGAAGAAGAATTCTTACATAGTGCTGAAATAGTTTCTCAACGTCTCAAGGCTCATGGATATCAGTTTGTGGTGGTGGATTACCTCTGGTATAGGAAGAAAGTCAAGGGCGCTTATCCTGATTCTCTTGGATTTGACGTGATTGATGAATGGGGAAGGATGCTCCCAGACCCAGCAAGGTGGCCTTCTTCCACAGGTGGGAAGGGATTCAGTCAAGTAGCTAATAAAGTACATAGTTTAGGTTTGAAGTTTGGGGTTCATGTTATGAGAGGGATAAGCACCCAAGCTGTCAATGCAAACACCCCTATCCTAGATACAACAAAGGGAGGTGCTTATGAAGAATCTGGTCGAGTGTGGCATGCAAAAGATATAGCAATGCCAGAAAGGGCTTGTGCATGGATGCCTCATGGTTTCATGAGTGTCCTCAGTGAGCTTAATCGCCCTATTTTGTATTCTCTGTCTCCTGGAACCAGTGTGACACCAGCCATGGCCAAGGATGTCAGTGGACTAGTCAACATGTATAGAATAACAGGAGATGACTGGGATGTGTGGGCAGACGTCAAGGCTCATTTTGATGTAACAAGGGATTTTTCTACAGCTAATATGATAGGAGGAAAAGGTTTAAAGGGAAATTCCTGGCCGGATTTGGACATGCTACCATTTGGATGGCTAACTGATCCAGGTGCAAATGAAGGTCCACACAGGTTTAGTAGACTCACTCTAGAAGAAAAAAGGACACAGTTTCCTTATGTCACAAGCACAAAAAACTTGAAGCACCCTGGAGGGGAAAAAGCAAGACCTAAGAAAGGAACAAAAGCATCATATACACATTCATTAGGTTTGACTGGCTGCAGTGAATCAAAGGCAAGTGGTTGGTCTATTGAAAGTCTTAACCAAGATCTTGAAAGAATCTGTTGGAAAAAGAGTGTAGAAAACAAGCATCAGTCCCCTTTCTGCGTGCACAAGAGAGAACTTCAATTCAGATTAGATGGAGTGAGTATGTATCAAGAGGACTATCGAGGGAAACATCAATTAGTTGCAACTGACAGAATGAGATATTGCTTGGACGCTTCTCCAAAACGAAAGGTTACTTCTAAAGAGTTCAAGAGAGGTACATTTTCTCCATGCAGATGGGATTCAAATCAGATCTGGGAACTGAACTCCAATGGGACCATGGTAAATAGTTACTCCGGTCTTTGTGCAACAGTAGAGTATGTTGAAGCTAATGTTAATTCTGGTGGGATTCGCTCTTGGATCGCAACAGGAAGAACAGGGGAAATCTATCTTGCTTTCTTCAATCTAAGCGAAGAGAAGACGGAGATATATGCAAAGACATCATATCTGGCTAAGGTTCTTCCTGACAAAAGCATCACTTCATGCAAGGGCAAGGAAGTGTGGAGTGGAAAAGACGTAATAACAACGGAGGGGACGATATCAATCAACGTGGAAATTCATGGATGTGCACTATTTGTTCTAAATTGCAACTAG 1674 0.4295 MFGGTDVPAMIKCFSVSLASLWVLLALCSLSVSSQNISESGLQQASFPPRGWNSYDSFCWTISEEEFLHSAEIVSQRLKAHGYQFVVVDYLWYRKKVKGAYPDSLGFDVIDEWGRMLPDPARWPSSTGGKGFSQVANKVHSLGLKFGVHVMRGISTQAVNANTPILDTTKGGAYEESGRVWHAKDIAMPERACAWMPHGFMSVLSELNRPILYSLSPGTSVTPAMAKDVSGLVNMYRITGDDWDVWADVKAHFDVTRDFSTANMIGGKGLKGNSWPDLDMLPFGWLTDPGANEGPHRFSRLTLEEKRTQFPYVTSTKNLKHPGGEKARPKKGTKASYTHSLGLTGCSESKASGWSIESLNQDLERICWKKSVENKHQSPFCVHKRELQFRLDGVSMYQEDYRGKHQLVATDRMRYCLDASPKRKVTSKEFKRGTFSPCRWDSNQIWELNSNGTMVNSYSGLCATVEYVEANVNSGGIRSWIATGRTGEIYLAFFNLSEEKTEIYAKTSYLAKVLPDKSITSCKGKEVWSGKDVITTEGTISINVEIHGCALFVLNCN 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1945 557 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 19 177 IPR002241 GO:0004553|GO:0005975
Aed5g1945 557 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 337 554 IPR002241 GO:0004553|GO:0005975
Aed5g1945 557 Gene3D Aldolase class I 203 313 IPR013785 -
Aed5g1945 557 PANTHER ALPHA-GALACTOSIDASE 202 310 - -
Aed5g1945 557 Gene3D Aldolase class I 39 202 IPR013785 -
Aed5g1945 557 Pfam Alpha galactosidase A 61 282 IPR002241 GO:0004553|GO:0005975
Aed5g1945 557 SUPERFAMILY Ricin B-like lectins 406 484 IPR035992 -
Aed5g1945 557 Gene3D - 470 556 IPR013780 -
Aed5g1945 557 Pfam Alpha galactosidase C-terminal beta sandwich domain 475 554 IPR041233 -
Aed5g1945 557 PANTHER ALPHA-GALACTOSIDASE 19 177 - -
Aed5g1945 557 PANTHER ALPHA-GALACTOSIDASE 337 554 - -
Aed5g1945 557 SUPERFAMILY (Trans)glycosidases 45 311 IPR017853 -
Aed5g1945 557 SUPERFAMILY Glycosyl hydrolase domain 473 555 - -
Aed5g1945 557 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 202 310 IPR002241 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1945 Aed-Chr5 22437192 22441988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1945 23 386 Glycoside Hydrolase AT3G26380 50.985 3.34e-158 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1945 - - gmx:100783705 1006.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1945 5 22437192 22441988 Aed7g1922 7 22284945 22291117 PCT