Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1930 ATGGCAGCAACAATATCAGCAATGGCAATGATCAGCGCGAAATGCGTGAACCCCGCGCCATCAAAGTTCCCCACGAAGCTAACATCATCAAAACCTTCTCTTCAGATCAACCTTCCAAAGGGCCTCATAGCTACCTCACCCGAAAGCACCAAACTTTCCGGCACCGCGACAGCAATCGCAGGAGCAATATTCACGACCCTTGGAACCTGCGACGCCGCTTTCGCCGTTCAACAAATAGCCGACATAGCAGAAGGCGACAACCGCGGTCTTGCGCTGCTGCTGCCCATAATCCCAGCTATAGGGTGGGTTCTGTTCAACATCCTGCAGCCGGCACTGAACCAGCTGAACCGCATGCGCAGCACCAAAGGCGTGATCATTGGGTTGGGGCTTGGCGGCTTGGCGGGGCTGATGGCTGCGCCGCCGCATGCATCGGCTTCTGAAGTTGCGGCGATCGCTGAAGCTGCTGCGAGCGACAACAGGGGACAGCTTCTTCTGTTTGTTGTGACGCCGGCTATTGCTTGGGTGCTATACAACATCTTGCAGCCGGCTCTCAACCAGCTCAACAGGATGAGATCTGACTGA 582 0.5584 MAATISAMAMISAKCVNPAPSKFPTKLTSSKPSLQINLPKGLIATSPESTKLSGTATAIAGAIFTTLGTCDAAFAVQQIADIAEGDNRGLALLLPIIPAIGWVLFNILQPALNQLNRMRSTKGVIIGLGLGGLAGLMAAPPHASASEVAAIAEAAASDNRGQLLLFVVTPAIAWVLYNILQPALNQLNRMRSD 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1930 193 Pfam Photosystem II protein Y (PsbY) 86 118 IPR009388 GO:0009523|GO:0015979|GO:0016021|GO:0030145
Aed5g1930 193 Pfam Photosystem II protein Y (PsbY) 158 190 IPR009388 GO:0009523|GO:0015979|GO:0016021|GO:0030145
Aed5g1930 193 SUPERFAMILY ABC transporter involved in vitamin B12 uptake, BtuC 52 187 IPR037294 -
Aed5g1930 193 PANTHER PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC 1 192 - -
Aed5g1930 193 Hamap Photosystem II protein Y [psbY]. 86 120 IPR009388 GO:0009523|GO:0015979|GO:0016021|GO:0030145
Aed5g1930 193 PANTHER PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC 1 192 IPR038760 GO:0009523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1930 Aed-Chr5 22370067 22370648 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1930 K02723 - gmx:100779397 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1930 5 22370067 22370648 Aed7g1900 7 22105636 22106217 PCT