Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1636 ATGAGAACAACAAGAGGAAGAGCGTGTTATTCCGGTGTAGTCTCAAGGATGTGTTCCGACGTGAGGGTTGCAAAGAGAAACAAGGATCTGCACATGCATATGCACATGCATGTTCCCGGAGACTCTCATCTTTTTAGCCGGAAAAGGCAGAGGAAAACGCCGGAAATAAACTCCGCCGCTGATTTCGATTTTTTTGAGTCCTTGCCGGACGACCTTGTAATCTCTATCTTCTGCAAGCTTAGCTCCACCGCCACTAAACCTTCTGATTTCCTCAATGTTTTAATCACGAGTAAGAGGTTAAACAGATTAGCACTTCATTCGCTTGTGTTATCTAAAGCCTCGCCCAGAACTTTCGCCATTCAAGCAAAAGATTGGTGCGATTCTGCACACAAATTCCTCAAACACTGTGCCGATGCTGGAAACGTTGAAGCTTGCTATACCTTAGGCATGATTCGCTTCTACTGTTTGCAAAACAGAGGGAGCGGCGCGTCGTTAATGGCGAAGGCGGCGATTAACTCTCACGGAAGGGCTCTGTACGCACTGGCCGTGATTCAGTTCAATGGCAGCGGAGGGACAAAGAGCGACAAGGACCTACGCGCCGGCGTGGCGCTGTGCGCGAGAGCGGCGTTTCTCGGCCACGTTGACGCGCTGCGCGAGCTTGGCCACTGCCTGCAAGACGGTTATGGCGTGCGGCAGAACATAGCCGAGGGGCGGCGCTTCCTGGTGCAGGCCAACGCGCGTGAACTCGCCGCCGTGCTATCCACCGGTGCGGCGGCGCGTACCTGGCTGAGTTGGAATCTTCAGCCGCAGCTCCGACAGGGGTCCGGGTGTCCTTTGCTCAGCGATTTCGGATGCAACGTTCCGGCGCCGGAGGTGCATCCGGCGAGCCGGTTCATGGCGGAGTGGTTCGCCGTGCGCGGCGGTTCTCCGGGAGCGGGGCTGAGGCTGTGTTCGCACGCGGGGTGCGGGAGGCCCGAGACGAGGAAGCACGAGTTTCGAAGATGTTCTGTGTGTGGCGAGGTGAATTATTGCTCACGCGCCTGCCAAGCGCTTGACTGGAAGTTCCGGCACAAGGCGGAGTGCGCCCCCGCGGAACGGTGGCTCGAGGAGGACGGCGAAGATGTCGGTGACGACGAAGGTGACGGAGAGGTGGATGTTATGGTAGATAGTTAG 1173 0.5669 MRTTRGRACYSGVVSRMCSDVRVAKRNKDLHMHMHMHVPGDSHLFSRKRQRKTPEINSAADFDFFESLPDDLVISIFCKLSSTATKPSDFLNVLITSKRLNRLALHSLVLSKASPRTFAIQAKDWCDSAHKFLKHCADAGNVEACYTLGMIRFYCLQNRGSGASLMAKAAINSHGRALYALAVIQFNGSGGTKSDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVRQNIAEGRRFLVQANARELAAVLSTGAAARTWLSWNLQPQLRQGSGCPLLSDFGCNVPAPEVHPASRFMAEWFAVRGGSPGAGLRLCSHAGCGRPETRKHEFRRCSVCGEVNYCSRACQALDWKFRHKAECAPAERWLEEDGEDVGDDEGDGEVDVMVDS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1636 390 Gene3D Tetratricopeptide repeat domain 103 264 IPR011990 GO:0005515
Aed5g1636 390 SUPERFAMILY HIT/MYND zinc finger-like 316 366 - -
Aed5g1636 390 Pfam MYND finger 321 361 IPR002893 -
Aed5g1636 390 SUPERFAMILY F-box domain 51 121 IPR036047 GO:0005515
Aed5g1636 390 MobiDBLite consensus disorder prediction 369 390 - -
Aed5g1636 390 ProSiteProfiles Zinc finger MYND-type profile. 319 361 IPR002893 -
Aed5g1636 390 PANTHER HCP FAMILY PROTEIN WITH MYND-TYPE ZINC FINGER PROTEIN 45 388 - -
Aed5g1636 390 SUPERFAMILY HCP-like 125 244 - -
Aed5g1636 390 Gene3D - 313 366 - -
Aed5g1636 390 PANTHER MYND DOMAIN-CONTAINING 45 388 IPR044508 -
Aed5g1636 390 MobiDBLite consensus disorder prediction 370 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1636 Aed-Chr5 20466818 20468925 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1636 - - gmx:100798174 686.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g1852 7 21787380 21789813 Aed5g1636 5 20466818 20468925 PCT