Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1611 ATGCAAATGATGAGTCTCATTAATATTGTGTTGAGAGTGATGGGTTCTCTGGCTCGACCAAACTCACTATTTTTCCGAAGCAGAGGACCCAGACTTACACGGAAAGTAGCAAGTGAGGTTTTGGCTTTTCAGCGTTCCAATTCGAATGTGAAGCTTGAAGTTGAAGCAAGCCAGAAGAACATTGAAGCGCCTGTTGTTGTAGTCACTGGAGCCTCCAGAGGCATTGGCCGTGCAATTGCACTTTCCTTAGGTAAAGCCGCATGCAAGGTCCTGGTCAACTATGCCAGGTCATCCAGGCAAGCTGAAGAGGTTTCCAACTTGGCAGTTGATGCTTGGGGAACTGTTGATGTGTTGGTAAACAATGCAGGTGTGCTATTAGCCTATTGCTTATTTATTTTAATTTCAGATTTCATAAATAAAAATATTATGGGTTCAGGAATTACTCGAGATGGTTTGTTAATGAGAATGAAGAAATCACAGTGGCAGGACGTTATCGATCTGAATCTCACTGGAGTTTTTCTTTGCATGCAGGAGCTGATAGTTTTGCTTTTAACAGGCAGCAGCAAAGGTTATGGCGATGAAAAAGAAGGACAAGCCAATTATAGTGCTGCAAAGGCAGGGGTAATTGGCCTCACAAAAAGTGCTGCCAGGGAGTATGCTAGCAGAAACATCACTGTTAATGCAGTAGCCCCTGGGTTTATTGCATCTGATATGACTGCCAAACTACGACCAGACTTTGAGAAAAAGAGATTGGAGTTAATCCCCTTAGGTGACTTACTATTTTCACCTTGGATTCAGGAAGACTTGGCCAACCAGAAGAAGTTGCTGGACTTGTGGAATTCTTGGCTCTTAATCCTGCTGCTAATTACATCACTGGGCAGGTCATACACTTATTTTCCTATTGGTCTATCATTAAACTAG 921 0.4278 MQMMSLINIVLRVMGSLARPNSLFFRSRGPRLTRKVASEVLAFQRSNSNVKLEVEASQKNIEAPVVVVTGASRGIGRAIALSLGKAACKVLVNYARSSRQAEEVSNLAVDAWGTVDVLVNNAGVLLAYCLFILISDFINKNIMGSGITRDGLLMRMKKSQWQDVIDLNLTGVFLCMQELIVLLLTGSSKGYGDEKEGQANYSAAKAGVIGLTKSAAREYASRNITVNAVAPGFIASDMTAKLRPDFEKKRLELIPLGDLLFSPWIQEDLANQKKLLDLWNSWLLILLLITSLGRSYTYFPIGLSLN 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1611 306 PANTHER 3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE 4 142 258 - -
Aed5g1611 306 PANTHER SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER 142 258 - -
Aed5g1611 306 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 201 220 IPR002347 -
Aed5g1611 306 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 113 124 IPR002347 -
Aed5g1611 306 PANTHER 3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE 4 46 106 - -
Aed5g1611 306 PANTHER SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER 46 106 - -
Aed5g1611 306 Gene3D - 42 271 - -
Aed5g1611 306 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 65 259 IPR036291 -
Aed5g1611 306 Pfam short chain dehydrogenase 97 244 IPR002347 -
Aed5g1611 306 PRINTS Glucose/ribitol dehydrogenase family signature 65 82 IPR002347 -
Aed5g1611 306 PRINTS Glucose/ribitol dehydrogenase family signature 113 124 IPR002347 -
Aed5g1611 306 PRINTS Glucose/ribitol dehydrogenase family signature 201 220 IPR002347 -
Aed5g1611 306 PRINTS Glucose/ribitol dehydrogenase family signature 222 239 IPR002347 -
Aed5g1611 306 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 188 216 IPR020904 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1611 Aed-Chr5 20307792 20309733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1611 23 257 Acyl Lipid Metabolism Gene Families AT1G24360 46.520 2.39e-65 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1611 K00059 - gmx:100811718 312.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g1876 7 21943303 21947391 Aed5g1611 5 20307792 20309733 PCT