Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1027 ATGATTGAACTTAAGGGTGAATTTGAAGAATCAGTGGTGACCCTTTTGTTTTTGTGGTTGTGGGTAGCTGGTATTTTCATCTCTATGGATTTTGGGATGAGTAAGAATGATGGCCAGAAACAACAACACCTTCTCAATGGAGGTGTTGCTGCTGCTGCTGCTTCCAGTAGAACCAATGGCAATGGCTTTATTCCCTCATTTCGTAGTCTCTCTGGTTACCTGAAGATTGTTTCATCTGGTGCCTCTACTGTTGCTCGGTCTGCAGCTTCCTCTTTTGCGTCGTCAATTTTGGACAAGGGTGATGATGCTGACCGTGATCGGGTTATTTGGGCTGGGTTTGACACATTAGAGGGCCAGGGAGAAGACATTCGGCAAGTACTTCTTCTAGGCTATTCGTCTGGCTTCCGGGTTTGGGATGTTGATGATTCAAATAATGTCCGTGACCTAGTTTCCAGACAGGATGGTCTTGTTTCTTTTATGCAAATGGTACCAAGTCCAATTGTATCAAAGAGACCAGAGGACAAGTTTGCAGACAAGCGACCATTGTTGGTAGTTTGTATGGATGGTTTCTTGGCTGGCAGAGGCAAAACACAAGATGGGTTGGGTGCCACTTGCAATGGAGGCACTTTAAACCCCCATGACCAAGTGAATGGAAACTACCTGCCAACCACTGTTCAATTTTATTCTATGAGGTCCCGATCTTACGTTCATGTACTAAAGTTTAGATCATTTGTTTATTCTGTAAGATGTAGTTCTCGAATAGTAGCCATTTCTCAAGCCACTCAGATACACTGTTTTTCTGCCACAACATTAGAAAGAGAGTATACTTTACTTACCAATCCTATAGTCATGCCTCCTCTCGGTTCTGGAGGCATTGGCTTTGGACCACTTGCTGTGGGTCCTAGATGGCTGGCCTATAGTGGAAGCCCAGCTGCAACAGCTACTTCTGGGCGTGCCAGCCCACAGTGTTTGACACCTTCTGCAAGCTTTCCTGGTTTTTCTTCCAATGGGAGCTTGGTTGCACACTATGCCAAAGAGTCAAGCAAGCATCTTGCTGCTGGGATTGTAACACTTGGAGATATGGGGTATAAGAAAATTTCCAGATACTGCACGGAACTTCACCCAGATAGTAGCAGTTCTATACAATCTGTAAATTCTGGTCCAAAAGGAAATAGAATTGTTAATGGCCATTCAACAGATGCGGATAACATTGGGATGGTAATTGTCAGAGATATAGTCAGTAAAAATGTCGTTGCCCAATTCCGGGCCCATAAGAGTCCTATTTCAGCTTTATGCTTTGATCGTAGTGGCACCATTTTGGTGACTGCTTCTGTTCAGGGGCACAACATTAATGTTTTTAAGATACTCCCTGGATATGAGAGAGTTTCAGCATCTGATGCTGGCCCTTCTTATGTTCATCTCTACAGGCTGCAACGTGGCTTGACAAATGCAGTAATTCAAGATATCAGTTTTAGTGTTGATAGCAGGTGGATTATGATTAGTTCCACAAGGGGAACTAGCCATCTATTTGCTATAAATCCTCAAGGAGGACCTGTAAATATTCTTTCATGTGACAATAGTTTAACAGAAAAAAGTGGTGGATTGGATGTTATGACTAATCAAGAAGTTCATTGGCCTCATAGTTCAGCCTTAGAAATTTGTAAACAGCAAAGCCTCTGCGCTGCTGGTCCTCCAATCACACTTTCCGTTGTAAGCAGAATTAGAAATGGATATAATGGCTGGAGAAGCACAGTAACAGGTGCTGCTGCAGCTGCAACAAATAGGATTAGTTCCCTTTCTGGGGCTATTGCTTCATCTTTCCGTAACTTTGAAGGCAGCAGTACCTTGTATGTTAATGGGAACTATTCCAAGGAAAAGCATCATCTGTTGGTCTTTTCACCCAATGGTTCTATGATTCAGTATGCTCTGCAGACCAATAACAGTCAAGATTCAGGTGTTGTTTCTGGTGTAACGCCTGCTTATGAATCTGCCACACTGACAGACACAAGAGTAGTTGTTGAGCCTATCAAGAAATGGAATATAAGTCGGAGACATAGCTGGAGAGAGGGAGAAGATAATATTGACATATATGGGGAGAATGGAGTTTCAGACAGCAATAAATTATATTCAGAGGAAGTGAAGAAGGATATTATTAGCCCTAAAGTGAAGAATGTAGCAGTGAAATGGAATTCCTGTTCTGAGAAAGGGCATCATTTGTATATTTCAGAAGCTGAACTGCAAATGCATCAAGCTAAGACACCATTGTGGGCAAAGACTGGGATATATTTTCATTCAGTGGGTAAAGAGGCTACTACATTGATGATGGATGAAGAAACTGCTTCCTGTGGGGAATTTGAGATTGAAAAGATTCCAACTCGTCTTGTAGAAGCTAGGTCAAAAGACTTGGTTCCAGTTTTTGACTATATTCAGACCTCAAAATTTCAACAAATAAGAACTCCTGCTGTGGATAACAAGTTAAATGAACAACTTTTGCATCAAAGTTCCAAATTTTTTTATAAGGGAAGGATTTCACCCAGGGGTGTTTTGGGATCTCCTGATTGTATAACTAATTCTGGTGCAAATATTGCTGAATTTAAAAGTGGGACAGAAGGAAATGAGTGGGGTGGTTGTTTGATTTCAGCAGAAACAAAGAATTTTGTAAATAACAATAACATCATTGTAAATAATGGAAGAAAGAACATAAACATGGATGCTCATCACATGTTTGTAAATAGTGACAGAAAAGGCCTGAAATTGGAAAAGCACTGCGAAGAAAAAGGAGATGACTTTGATTGA 2796 0.4131 MIELKGEFEESVVTLLFLWLWVAGIFISMDFGMSKNDGQKQQHLLNGGVAAAAASSRTNGNGFIPSFRSLSGYLKIVSSGASTVARSAASSFASSILDKGDDADRDRVIWAGFDTLEGQGEDIRQVLLLGYSSGFRVWDVDDSNNVRDLVSRQDGLVSFMQMVPSPIVSKRPEDKFADKRPLLVVCMDGFLAGRGKTQDGLGATCNGGTLNPHDQVNGNYLPTTVQFYSMRSRSYVHVLKFRSFVYSVRCSSRIVAISQATQIHCFSATTLEREYTLLTNPIVMPPLGSGGIGFGPLAVGPRWLAYSGSPAATATSGRASPQCLTPSASFPGFSSNGSLVAHYAKESSKHLAAGIVTLGDMGYKKISRYCTELHPDSSSSIQSVNSGPKGNRIVNGHSTDADNIGMVIVRDIVSKNVVAQFRAHKSPISALCFDRSGTILVTASVQGHNINVFKILPGYERVSASDAGPSYVHLYRLQRGLTNAVIQDISFSVDSRWIMISSTRGTSHLFAINPQGGPVNILSCDNSLTEKSGGLDVMTNQEVHWPHSSALEICKQQSLCAAGPPITLSVVSRIRNGYNGWRSTVTGAAAAATNRISSLSGAIASSFRNFEGSSTLYVNGNYSKEKHHLLVFSPNGSMIQYALQTNNSQDSGVVSGVTPAYESATLTDTRVVVEPIKKWNISRRHSWREGEDNIDIYGENGVSDSNKLYSEEVKKDIISPKVKNVAVKWNSCSEKGHHLYISEAELQMHQAKTPLWAKTGIYFHSVGKEATTLMMDEETASCGEFEIEKIPTRLVEARSKDLVPVFDYIQTSKFQQIRTPAVDNKLNEQLLHQSSKFFYKGRISPRGVLGSPDCITNSGANIAEFKSGTEGNEWGGCLISAETKNFVNNNNIIVNNGRKNINMDAHHMFVNSDRKGLKLEKHCEEKGDDFD 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1027 931 Pfam Breast carcinoma amplified sequence 3 563 804 IPR022175 -
Aed5g1027 931 SMART WD40_4 414 454 IPR001680 GO:0005515
Aed5g1027 931 SMART WD40_4 470 511 IPR001680 GO:0005515
Aed5g1027 931 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 45 899 IPR045142 GO:0006914
Aed5g1027 931 Gene3D - 303 542 IPR015943 GO:0005515
Aed5g1027 931 SUPERFAMILY WD40 repeat-like 135 514 IPR036322 GO:0005515
Aed5g1027 931 PANTHER AUTOPHAGY-RELATED PROTEIN 18F 45 899 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1027 Aed-Chr5 8107676 8114651 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1027 - - gmx:100778343 1484.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g1027 5 8107676 8114651 Aed5g1027 5 8107676 8114651 ECH
Aed1g0716 1 8291457 8296578 Aed5g1027 5 8107676 8114651 PCT